Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3908 ATGGAAGGATCAGAGATTTCCCATCACAACAGATCCTGGGTTGAAGACATTTATTGGAACCATTTTCAGTTCCTCCATTTCGCAAAGTTTATGCCCAGCTCTTATAATCAGCACCTTGCACTTCCCAAAGCATTTTATGGTAATTTGAAGAAGAAGCTGCCAGAAAATGTGAGCCTTCGAGGTCCTGGTGGTGCCCTGTGGAATATAGGGTTGACAACAAGAGAAGATACCTTGTACTTCACACACGGTTGGAAACAGTTTGTGAAAGATCACTCCTTGATAGAGAATGATTTCCTGGTATTTAAGTTCAATGGTGAATCAACATTCGATGTTCTAATATTCGATGGGAAGAACTTCTGCGAGAAGGCTGCTGCTTATTTCGTTCGAAATGTCGGAAACGGGAATCCAGAAAATGGGATTGGACGCTTGACAATGAGAAAAGACACTGAGAACTCTAATGCTGGTGTAGCATGTGCATCGCCTCAGAAATCTGTGCATGTTAACAGTTTCCCAGTGCCAGACGCTGTGCCTGTACGCACCGAACCTCCTAGTGAGAGAAATTTTAATGGCGATGTTGAATTCTCCACCCCTAAAGAAGTTGTTAATGTAGATGGTGATGCCGGTGTTGAAGTTGATGCTAACGGAGTGACGATGTCAGAAGGTCGCACCCGCACTACTGGTAAAAGGATTAGGAAGCCGACTCAAGCTTTTAACCATTTCCAAACTAAGCGGAGACCAGTAAGGGTGACAAAAACATCTAATGCACATAAGGAAGTAGCAAACGTGGTAATCGATGCAGATGCAGATCCTGAACCTGCTTCCGCGGGTAAAAGTGAGGGTGGGAATTATGAATTATATGTCTCACAGAGGAGGCCTGTCACTGAAGAAGAGATGAATAGTACCCTTCAGATGGCTAAGGCAGCATGTACCGATGACAGCCTCTGTGTTGTCATGCGACCAACGCATGTTTATAAGAGATTCTTCGTGTCGCTCCCGAATAAGTGGATACTGCAACATATCCCTCCACGAACTCAAGACATTATATTGCGTGTGGTTCATAGCGAATGGCTTGCAAAATACAGCTACCATAACCCTAGAAACACCGGAGGACTGAGCGGAGGGTGGAAACGCTTTACCCTGGATAACAACCTGGAAGAGTACGACGTGTGTGTTTTCAAACCCGGAGGCCTGATGAACAACACATTGATCTTGGATGTCAACATTTTCAGAGTTGTTGAGGAGATTAAGCCTTTGACACAAGTGAGAGCTGCAGGATCAGCCAAAAAGAGTGGTAAGAAAAAGGCCTTAAAGGCCATCCAAATATAA 1326 0.4449 MEGSEISHHNRSWVEDIYWNHFQFLHFAKFMPSSYNQHLALPKAFYGNLKKKLPENVSLRGPGGALWNIGLTTREDTLYFTHGWKQFVKDHSLIENDFLVFKFNGESTFDVLIFDGKNFCEKAAAYFVRNVGNGNPENGIGRLTMRKDTENSNAGVACASPQKSVHVNSFPVPDAVPVRTEPPSERNFNGDVEFSTPKEVVNVDGDAGVEVDANGVTMSEGRTRTTGKRIRKPTQAFNHFQTKRRPVRVTKTSNAHKEVANVVIDADADPEPASAGKSEGGNYELYVSQRRPVTEEEMNSTLQMAKAACTDDSLCVVMRPTHVYKRFFVSLPNKWILQHIPPRTQDIILRVVHSEWLAKYSYHNPRNTGGLSGGWKRFTLDNNLEEYDVCVFKPGGLMNNTLILDVNIFRVVEEIKPLTQVRAAGSAKKSGKKKALKAIQI* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3908 441 Pfam B3 DNA binding domain 316 401 IPR003340 GO:0003677
Amo16g3908 441 Pfam B3 DNA binding domain 27 115 IPR003340 GO:0003677
Amo16g3908 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 7 138 IPR044837 -
Amo16g3908 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 229 420 IPR044837 -
Amo16g3908 441 SMART B3_2 314 412 IPR003340 GO:0003677
Amo16g3908 441 SMART B3_2 27 117 IPR003340 GO:0003677
Amo16g3908 441 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 229 420 - -
Amo16g3908 441 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 138 - -
Amo16g3908 441 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Amo16g3908 441 Gene3D - 20 120 IPR015300 -
Amo16g3908 441 CDD B3_DNA 26 115 IPR003340 GO:0003677
Amo16g3908 441 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Amo16g3908 441 Gene3D - 292 414 IPR015300 -
Amo16g3908 441 SUPERFAMILY DNA-binding pseudobarrel domain 23 116 IPR015300 -
Amo16g3908 441 CDD B3_DNA 313 410 IPR003340 GO:0003677
Amo16g3908 441 SUPERFAMILY DNA-binding pseudobarrel domain 314 401 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3908 13 410 REM Transcription Factor Family AT4G33280 31.678 4.47e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g3908 B3 5.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3908 - - adu:107495813 884.404