Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3905 ATGGGATTGTTTCTGATCTCATACATAATCCTCAAATACTCAATAGGTGTCATGTTTTTCTTTGCATTGTTGATCTACACGTTTCGAAGAAGGCATATATCAATCTACGAAAATATTGAGGATTTTCTACAAGGAAATACTCTCATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACGAGAGGTTTTAAGGAGAAGTTGGGAGAAGGAGGATTTGGTGCAGTGTACAAAGGAAAACTACAAAGTGGGCCTTTTGTAGCCATAAAAATGTTGGGTAAAGCCAAAGCTAATGGCCAAGAATTTATCAGTGAAGTTGCTACCATTGGTAGAATACACCATGCAAATGTAGTAAGGTTGATTGGGTTTTGTGTGGAAGGTTCAAAACGCGCTCTTATATATGAATTCATGCCAAATGGTTCTTTAGATAAATATATATTTTCTAAAGAAACAAATGTATCTCTAACTTCGGAGAAGATGTTTGAGATATCCCTTGGTGTGGCACACGGTATGGCTTATCTACATGAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCACAACATTCTTCTTGACGAGAACTTCATTCCTAAGGTGTCAGACTTTGGTCTTGCAAAACTATATCCTCTTGATAATAGTATTGTGACTTTGACTGCGGCAAGAGGAACCATTGGTTACATGGCCCCAGAATTGTTCTATCAAAATATTGGAGCAGTATCTTACAAGGCTGATGTGTATAGTTTTGGAATGCTTTTGATGGAAACAGCAAGTCAAAGAAGAAATTTAAATCCTCATGCAGAGCATTCAAGTCAACTTTATTTTCCATTTTGGATATATGATCAGTTGGCTGCTGAGGAAACTGATGAGATTGAGATGGAAACTTTTATGCATGAAGAAAGGAGTGAGTTAGCAAAAAAGATGTTTATAATTGCATTGTGGTGCATACAACTGAAGCCAAGTGATCGTCCCTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGATGTTGCAAGTATTGAAATGCCTCCAAAACCTTCATATTGTCCAAATGATGTGATTCAAAGAGATTCCCAAGTTGACTCATCAGGAATAGATGCTTCAAATAATTCTTATGTGTCTTCAAGTTTTGAGGAGGAAAGTACATCCAATCCCTTGCTAAAGTTTTCTGCTTGA 1185 0.3629 MGLFLISYIILKYSIGVMFFFALLIYTFRRRHISIYENIEDFLQGNTLMPIRYSYKEIKKMTRGFKEKLGEGGFGAVYKGKLQSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYIFSKETNVSLTSEKMFEISLGVAHGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVTLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMETASQRRNLNPHAEHSSQLYFPFWIYDQLAAEETDEIEMETFMHEERSELAKKMFIIALWCIQLKPSDRPSMNKVVEMLEGDVASIEMPPKPSYCPNDVIQRDSQVDSSGIDASNNSYVSSSFEEESTSNPLLKFSA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3905 394 Gene3D Phosphorylase Kinase; domain 1 39 137 - -
Amo16g3905 394 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Amo16g3905 394 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 365 IPR045874 GO:0004672
Amo16g3905 394 PIRSF TyrPK_CSF1-R 64 155 - -
Amo16g3905 394 PIRSF TyrPK_CSF1-R 144 393 - -
Amo16g3905 394 SMART serkin_6 63 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3905 394 SUPERFAMILY Protein kinase-like (PK-like) 48 337 IPR011009 -
Amo16g3905 394 Pfam Protein tyrosine and serine/threonine kinase 65 336 IPR001245 GO:0004672|GO:0006468
Amo16g3905 394 Gene3D Transferase(Phosphotransferase) domain 1 138 351 - -
Amo16g3905 394 MobiDBLite consensus disorder prediction 362 387 - -
Amo16g3905 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Amo16g3905 394 ProSiteProfiles Protein kinase domain profile. 63 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3905 394 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3905 Amo-Chr16 150829915 150831099 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3905 17 349 Receptor kinase-like Gene Family AT4G18250 46.903 1.03e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3905 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3905 16 150829915 150831099 Amo08g0574 08 10486526 10489221 PCT
Amo16g3905 16 150829915 150831099 Amo17g2607 17 125370209 125373964 PCT
Amo08g0574 08 10486526 10489221 Amo16g3905 16 150829915 150831099 PCT
Amo17g2607 17 125370209 125373964 Amo16g3905 16 150829915 150831099 PCT