Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo16g3905 | ATGGGATTGTTTCTGATCTCATACATAATCCTCAAATACTCAATAGGTGTCATGTTTTTCTTTGCATTGTTGATCTACACGTTTCGAAGAAGGCATATATCAATCTACGAAAATATTGAGGATTTTCTACAAGGAAATACTCTCATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACGAGAGGTTTTAAGGAGAAGTTGGGAGAAGGAGGATTTGGTGCAGTGTACAAAGGAAAACTACAAAGTGGGCCTTTTGTAGCCATAAAAATGTTGGGTAAAGCCAAAGCTAATGGCCAAGAATTTATCAGTGAAGTTGCTACCATTGGTAGAATACACCATGCAAATGTAGTAAGGTTGATTGGGTTTTGTGTGGAAGGTTCAAAACGCGCTCTTATATATGAATTCATGCCAAATGGTTCTTTAGATAAATATATATTTTCTAAAGAAACAAATGTATCTCTAACTTCGGAGAAGATGTTTGAGATATCCCTTGGTGTGGCACACGGTATGGCTTATCTACATGAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCACAACATTCTTCTTGACGAGAACTTCATTCCTAAGGTGTCAGACTTTGGTCTTGCAAAACTATATCCTCTTGATAATAGTATTGTGACTTTGACTGCGGCAAGAGGAACCATTGGTTACATGGCCCCAGAATTGTTCTATCAAAATATTGGAGCAGTATCTTACAAGGCTGATGTGTATAGTTTTGGAATGCTTTTGATGGAAACAGCAAGTCAAAGAAGAAATTTAAATCCTCATGCAGAGCATTCAAGTCAACTTTATTTTCCATTTTGGATATATGATCAGTTGGCTGCTGAGGAAACTGATGAGATTGAGATGGAAACTTTTATGCATGAAGAAAGGAGTGAGTTAGCAAAAAAGATGTTTATAATTGCATTGTGGTGCATACAACTGAAGCCAAGTGATCGTCCCTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGATGTTGCAAGTATTGAAATGCCTCCAAAACCTTCATATTGTCCAAATGATGTGATTCAAAGAGATTCCCAAGTTGACTCATCAGGAATAGATGCTTCAAATAATTCTTATGTGTCTTCAAGTTTTGAGGAGGAAAGTACATCCAATCCCTTGCTAAAGTTTTCTGCTTGA | 1185 | 0.3629 | MGLFLISYIILKYSIGVMFFFALLIYTFRRRHISIYENIEDFLQGNTLMPIRYSYKEIKKMTRGFKEKLGEGGFGAVYKGKLQSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYIFSKETNVSLTSEKMFEISLGVAHGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVTLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMETASQRRNLNPHAEHSSQLYFPFWIYDQLAAEETDEIEMETFMHEERSELAKKMFIIALWCIQLKPSDRPSMNKVVEMLEGDVASIEMPPKPSYCPNDVIQRDSQVDSSGIDASNNSYVSSSFEEESTSNPLLKFSA* | 395 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo16g3905 | 394 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 137 | - | - | |
Amo16g3905 | 394 | ProSitePatterns | Protein kinases ATP-binding region signature. | 69 | 91 | IPR017441 | GO:0005524 | |
Amo16g3905 | 394 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 8 | 365 | IPR045874 | GO:0004672 | |
Amo16g3905 | 394 | PIRSF | TyrPK_CSF1-R | 64 | 155 | - | - | |
Amo16g3905 | 394 | PIRSF | TyrPK_CSF1-R | 144 | 393 | - | - | |
Amo16g3905 | 394 | SMART | serkin_6 | 63 | 336 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Amo16g3905 | 394 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 337 | IPR011009 | - | |
Amo16g3905 | 394 | Pfam | Protein tyrosine and serine/threonine kinase | 65 | 336 | IPR001245 | GO:0004672|GO:0006468 | |
Amo16g3905 | 394 | Gene3D | Transferase(Phosphotransferase) domain 1 | 138 | 351 | - | - | |
Amo16g3905 | 394 | MobiDBLite | consensus disorder prediction | 362 | 387 | - | - | |
Amo16g3905 | 394 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 183 | 195 | IPR008271 | GO:0004672|GO:0006468 | |
Amo16g3905 | 394 | ProSiteProfiles | Protein kinase domain profile. | 63 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Amo16g3905 | 394 | PANTHER | STRESS-INDUCED RECEPTOR-LIKE KINASE | 8 | 365 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo16g3905 | Amo-Chr16 | 150829915 | 150831099 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo16g3905 | 17 | 349 | Receptor kinase-like Gene Family | AT4G18250 | 46.903 | 1.03e-105 | 325 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Amo16g3905 | PK_Tyr_Ser-Thr | 3.7e-48 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo16g3905 | - | - | ahf:112697889 | 702.59 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g3905 | 16 | 150829915 | 150831099 | Amo08g0574 | 08 | 10486526 | 10489221 | PCT | |
Amo16g3905 | 16 | 150829915 | 150831099 | Amo17g2607 | 17 | 125370209 | 125373964 | PCT | |
Amo08g0574 | 08 | 10486526 | 10489221 | Amo16g3905 | 16 | 150829915 | 150831099 | PCT | |
Amo17g2607 | 17 | 125370209 | 125373964 | Amo16g3905 | 16 | 150829915 | 150831099 | PCT |