Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3902 ATGAGCAGAGGGAAAGGCTTGTGGTGTTCACTACTACTCTTACAGTTGCTCTTTGAAACTTGTTGCAATGGAGGAGCATGTAGGCCTTCCTCTTGCGGCAAAATCACCAACATAAAGCATCCTTTCCGGCTGAAGGATGATCCCGCAAGCTGTGGGGATTCCAGGTACGAGTTGTCTTGTGAGAATAACAGGACCGTCTTATATCTTTTCCCCGGTAAAAGCTACCATGTGCAGGCAATAAACTACAATAACTTCACGATCCGGCTTGTAGATCCCGCCATCTCAGACTCAGGGGATGACTGCTCCACCCTCCCCCGATATTCTTTGTCCGCTAGAAATTTCAGTGACAGCTATGGCTACATGGATATCCCCAAATACAGTGAACCATATGGAACTATTCAAAAACGAACTCATTATGATGTAGTAAGAATGTTCGAGAACGTGATCTTTTTGAACTGCAGCTATCCGATCAGGGATGATCCACGATTCGTGGATGCTGCCCCTTGCGTTAAAGAAGGAGGCAATGTTTATGCTGTTCTTGGAGACATGGAGGTGGGTGAATTAAGAGATGAGTGCCGTGTGAAGATGGTTGCTGCCTCATCCTTTCTTGTTCCACCGAGATCGTGGAAGGATTCATTCTTCATCTACCAAAACTTGTCATACGCTGAAATTCATAGAAAACTCAGTTACGGATTTCATCTTTCTTGGATGATCGGCGGTGCTTGTTCATCTGCCTGTGGCCAGCTGAGTTCTTGCTTCTTCAACGAAACCTCTCCAAATCTCATCACTTGCCGAGCGGATCGCTGTTTCACTCCGATAACGTTCAATGAATGCCGTGACGTGTCAAAGCTCCAAATCATTGCAGAAGATTTTGCATATGGATTTTTGACAGGATTTAACAACAAAGTGATTGTCAGAGATACCGGAGAAAAAATTTCTGGAAAAAAAAATGTAGTAGCTGCTATTAAGGTAGGTGCATTCACAGGACGGTTTCTAGTGCCATACATGATCGTCAAATATGCATTAGGTGTTATGTTTTTCTTTGCACTGTTGATCTACACATATCAAAGAAGACATATATCAATCTATGAGAATATTGAAGGTTTTCTACAAAAAAATACCCTCATGCCAATAAGGTATTCATATAAAGAAATAAAGAAGATGACAGCAGGTTTTAAGGAAAAGTTGGGGGAAGGAGGATTCGGCTCAGTCTACAAAGGACGGTTAATAAGTGGTCCCTTTGTAGCCATAAAAATGTTAGGTAAAGCAAAGGGAAATGGCCAAGAATTCATCAGTGAAGTTGCTACAATTGGTAGAATACATCATGCCAATGTAGTGAGGTTGATTGGATTCTGTGTCGAGGGTTCAAAACGCGCTCTTGTTTACGAATTTATGCCGAATGGTTCTCTAGATAAATTTATCTTCTCCAAAGTGGATAGTGTATTATTGACTTACCAAAAACTTTTTGAAATATCTCTTGGTGTGGCTCGTGGTATAGCTTATCTGCACGAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAACCTCATAACATTCTTCTTGACGAGAACTTCATTCCTAAAGTGTCAGATTTTGGTCTTGCAAAACTTAATCCTCTTGATAACAGTATTGTAACTTTGACCGCAGTAAGAGGAACAATTGGTTACATGGCTCCGGAATTGTTCTACAAAAATATTGGAGCAGTATCTTACAAGGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTCAAAGAAGAAACTCAAATCCAAATGCAGAGCATTCGAGCCAATTCTACTTTCCATTTTGGATATACGATCAATTGGCTCGGAAAAATGATGAGATAGAGATGAAAACTTTGATGCATGAAGAAACGAGTGAAGTAGCAAAAAAGATGTTCATAACTGCACTGTGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTGGTGAAAATGTTAGAAGGGAATGTTGCAAGCATTGAAATGCCTCCAAAGCCTTCATATTATCCAAATGATATGATTCACAGGGATTCTGAGATTAATTCAGGAGTAACTACTTTAAATAACTCTTCAGGCTCTTCAGGTTTTGATGAGGAGGAAATTACAACCATTCGTATGTGA 2148 0.4018 MSRGKGLWCSLLLLQLLFETCCNGGACRPSSCGKITNIKHPFRLKDDPASCGDSRYELSCENNRTVLYLFPGKSYHVQAINYNNFTIRLVDPAISDSGDDCSTLPRYSLSARNFSDSYGYMDIPKYSEPYGTIQKRTHYDVVRMFENVIFLNCSYPIRDDPRFVDAAPCVKEGGNVYAVLGDMEVGELRDECRVKMVAASSFLVPPRSWKDSFFIYQNLSYAEIHRKLSYGFHLSWMIGGACSSACGQLSSCFFNETSPNLITCRADRCFTPITFNECRDVSKLQIIAEDFAYGFLTGFNNKVIVRDTGEKISGKKNVVAAIKVGAFTGRFLVPYMIVKYALGVMFFFALLIYTYQRRHISIYENIEGFLQKNTLMPIRYSYKEIKKMTAGFKEKLGEGGFGSVYKGRLISGPFVAIKMLGKAKGNGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDKFIFSKVDSVLLTYQKLFEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLNPLDNSIVTLTAVRGTIGYMAPELFYKNIGAVSYKADVYSFGMLLMEMASQRRNSNPNAEHSSQFYFPFWIYDQLARKNDEIEMKTLMHEETSEVAKKMFITALWCIQLKPSDRPSMNKVVKMLEGNVASIEMPPKPSYYPNDMIHRDSEINSGVTTLNNSSGSSGFDEEEITTIRM* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3902 715 ProSiteProfiles Protein kinase domain profile. 390 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3902 715 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 690 IPR045874 GO:0004672
Amo16g3902 715 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Amo16g3902 715 Pfam Protein kinase domain 393 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3902 715 SMART serkin_6 390 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3902 715 CDD STKc_IRAK 396 664 - -
Amo16g3902 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Amo16g3902 715 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Amo16g3902 715 Gene3D Phosphorylase Kinase; domain 1 367 464 - -
Amo16g3902 715 SUPERFAMILY Protein kinase-like (PK-like) 375 663 IPR011009 -
Amo16g3902 715 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 690 - -
Amo16g3902 715 Gene3D Transferase(Phosphotransferase) domain 1 465 671 - -
Amo16g3902 715 MobiDBLite consensus disorder prediction 694 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3902 Amo-Chr16 150817727 150821790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3902 27 678 Receptor kinase-like Gene Family AT5G38260 34.132 5.58e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3902 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3902 - - ahf:112697889 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3902 16 150817727 150821790 Amo16g3902 16 150817727 150821790 ECH