Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3900 ATGAAGATATCAGCATTATTGTTTCTGCTGCTGCTTCTGAATCTGAATATTGGGAATTGCCAGCTGGATCACCATCCTCCGGTTCCATGTCCCGTGCGTGTGTACTGTTCAGAAAACAACACCAATATTCTTGAGCTGCCTGGCTCTTCTTCTTCAGTGAAATTCCCCATCCGTCACATTAATTACACATCAAACACTTTAGAAATTTATGATCCCAAAAACTGCCTTCCAGAACTCTTTCTCAGACTCGATTACTCATCATTTTATCCTTTCCGATCCGCAACATATTATTACAGTGGTGATGGGGAAGTTTCTTTTGATGATACGCGGACCAACTTTACTTTCTTTAATTGTTCTTCCGCACACCCCGACTCCCAGGAACAAGATACTTTATCTTGCCCGATTCGTGTGGCTGGCGATTTCGAAGATGTTACCGACTTAGGCCTCGTATCCTGCACAAAACTGGTCCGTAAGGTTATGCCAAGTTTCGCATATCTGATACAGGAGGGACATAATTCAATCAACTTGGTATCGAAGACAAGTTTCCAGAGTGGCCATGGATGCTTTGTTGCTTGCAACATATCCAAGAAAGAGTCTGAATTGGAGACTCCTAATGAAGGGAAGCCTAAAACAGGGAAGGAGTATGAATCCATAATTTTACCGATTGCAGGTGCATCTCTCCTTTTCTCAATACTGGGTGCCTCGTATCATGTATATCATTATTATAGAATAAAAGGGGAAGATCAAGAAAGAGTTGAAATTTTTTTGAAGGACTACGAGGCATTAAACCCAACCAGATTCTCTTATACTGATATCAAGAGAATCACTAAGCAGTTTAAGGACAAGTTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAATTGTCCAGTCAAATTCTGGTTGCCGTCAAGATTCTCAATAGCACAGAGGGAGAAGGAAAAGAATTCATAAATGAAGTGGGGACAATGTCCAAAGTTCACCATGTCAATGTGGTTCGCTTGCTTGGCTACTGCGCCGACGGATCTCACCGCGCTTTAGTTTATCACTTCTTCCCCAATGGTAATCTCCAGAGCTTCATCGCTCCGTCCAGCGACAAAGAAACCTTCCTTGGATGGAACAAGTTGCATCACATTGCTCTCAGCATAGCCAAAGGGATTGAATATCTTCACCAAGGCTGTGATCAAAGAATTCTGCATTTTGATATTAATCCTTACAATGTCTTGTTAGATGACAGTTTCACTCCAAAAATTTCAGACTTTGGGTTAGCTAAGTTATGCTCCAAAAATCGAAGTACTGTATCCATGACTGCAGCTAGGGGAACGTTAGGATACATGGCGCCTGAAGTTTTCTCTAGAAATTTTGGCAATGTATCTTACAAGTCCGATATCTATAGTTTTGGGATGCTATTACTTGAAATGGTTGGAGGAAGAAAAAATACAAATGCAAGTCAAGAAACATTTCAAGTTCTATATCCGAATTGGATACACAATTTGCTTGAAGGAGATGACACATATATTCCTATCGACGATGATGGAGATTTTAGAATTGCAAAGAAACTTGCAATAGTGGGACTATGGTGCATCCAGTGGCACCCCGTGCACCGTCCCTCCATGAAGGAGAGGAAGACGAGTTGA 1638 0.4158 MKISALLFLLLLLNLNIGNCQLDHHPPVPCPVRVYCSENNTNILELPGSSSSVKFPIRHINYTSNTLEIYDPKNCLPELFLRLDYSSFYPFRSATYYYSGDGEVSFDDTRTNFTFFNCSSAHPDSQEQDTLSCPIRVAGDFEDVTDLGLVSCTKLVRKVMPSFAYLIQEGHNSINLVSKTSFQSGHGCFVACNISKKESELETPNEGKPKTGKEYESIILPIAGASLLFSILGASYHVYHYYRIKGEDQERVEIFLKDYEALNPTRFSYTDIKRITKQFKDKLGEGAHGAVYKGKLSSQILVAVKILNSTEGEGKEFINEVGTMSKVHHVNVVRLLGYCADGSHRALVYHFFPNGNLQSFIAPSSDKETFLGWNKLHHIALSIAKGIEYLHQGCDQRILHFDINPYNVLLDDSFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSFGMLLLEMVGGRKNTNASQETFQVLYPNWIHNLLEGDDTYIPIDDDGDFRIAKKLAIVGLWCIQWHPVHRPSMKERKTS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3900 545 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 541 IPR045874 GO:0004672
Amo16g3900 545 Gene3D Phosphorylase Kinase; domain 1 251 351 - -
Amo16g3900 545 Gene3D Transferase(Phosphotransferase) domain 1 352 545 - -
Amo16g3900 545 SUPERFAMILY Protein kinase-like (PK-like) 258 541 IPR011009 -
Amo16g3900 545 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Amo16g3900 545 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 541 - -
Amo16g3900 545 Pfam Protein tyrosine and serine/threonine kinase 279 481 IPR001245 GO:0004672|GO:0006468
Amo16g3900 545 ProSiteProfiles Protein kinase domain profile. 277 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3900 Amo-Chr16 150795349 150797507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3900 260 539 Receptor kinase-like Gene Family AT1G66980 50.347 1.83e-90 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3900 PK_Tyr_Ser-Thr 6.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3900 - - adu:110273083 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3900 16 150795349 150797507 Amo16g3900 16 150795349 150797507 ECH