Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3899 ATGGATGCTAACACAACATGTGCCCCATCTTCGTGCGGCAAAGTCACCAACATAAGTCATCCTTTCCGGCTGAAGGATGACCCACAAAATTGTGGCGATGAGAGGTATGAGTTGGCTTGCGAGAATAACATCGCCGTGCTAGCTTTGTTCCCAGGGAAGAACTACCATGTTGAATCAATAAACTACAATAACTTCACAATCCGACTCGTAGATCCCGGCATCTCAGAGGATGATTGCTCCACCCTTCCTCACTATTCCATAACCAGATCCTATTTGAGGAATGAAGATGAAAGCAGACCATATGAAGACAGTCAATACCGACAGACTGATTTTCGTAATGGCTCCACACAAGTCGAAACTGTAGAATTAGACTATAACGTGGTTTTCTTGGAGTGCAGAAATCCGGTGAGGGACGATCCACGATATGTGGACACTGCCTCTTGCATTCAACAAGGCCATCATGTTTATGCCGTTGTTGGAGGGTTGACGGTGGTTGAATTAAGAGATGGTTGCCATGTGAAGCTGGTTGCTCCCTGCTCATCATCCTTTCTTGCTCCACCGAGATGGCCAAAGTACGAATCATTATTGAGCTGCAACCATAACTATTCATACGCTGAGATTCATAGGATGCTCAATTATGGATTTGAGCTTTCGTGGGTACCTGGTGCTTGTGAATATAAGTGTGGACTGAAGGGGAGTTCTTGCGCAATCGACCAAACCGCTCAAAGTAGTCTCATATGTTCGGAGGATTGTTACACACCACTTTTTGGGAAAGAATGTCGACTTCGGAAAGTAGTAGGAAAAGATGGTGGCGATTCTTTCTCTAAAGAGGATGTATTACCTATAATTGATGTAGGAGTATTCACGGGATGGTTTATGGTGCCATACATGGTCGTCAAATACATATTGAGTCTCATACTTTTTTTTGTAATGCTGATCTACACATGCCAAAGAAAACATGCATCAATTTATGAAAACATTGAGGAATTTTTGCAAGGGAGCAATTTCATTCCAATAAGGTATTCATATAAAGAGATAAAGAAAATGACAAGAGATTTTAAAGAAAAGTTGGGAGAAGGAGGATTCGGTTCCGTGTACAAGGGAAAGCTACGAAGTGGACCTTTTGTAGCCATAAAAATGTTGGGTAAAGCTAAGGCTAATGGTCAAGAATTCATCAGTGAAGTTGCTACAATTGGTAGAATACATCATGCCAATGTAGTAAGGTTGATTGGATTTTGTGTTGAGGGTTCAAAACGTGCTCTTGTATACGAATTTATGCCCAATGGTTCTCTAGATAAGTTTATTTTCTCCAAAGTGGATAGTGTATCATTGACTTACCAGGAACTTTTTGAAATATCTCTTGGTGTGGCTCGTGGTATAGCTTATCTGCATGAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAGCCTCACAACATTCTTCTAGACGAGAACTTCATTCCTAAGGTCTCGGACTTTGGTCTTGCAAAACTTTATCCTCTTGATAACAGTATTGTAACTTTGACAGCAGCAAGAGGAACCATTGGTTACATGGCCCCGGAGTTATTCTACCAAAATATTGGAGCACTATCTTATAAGGCCGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTCAAAGAAGAAATTCAAACCCAAACGCAGAGCATTCAAGCCAATTTTACTTTCCATTTTGGATATACGATCAATTGGCTAAGAAAAGTGATGAGATAGAGATAGAAATTTTGATGGATGAAGAAACGAACAAACTAGCAAAAAAGATGTTCATAACTGCACTATGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTGGTGAAAATGTTAGAAGGGGATGTTGCAAGCATTGAAATGCCTCCGAGACCTTCATATTATCCAAATGATATGATTCACAAAGATTCTGAGATTAATTCAGGAGTAACTACTTCAAATGATTCTTCTAGTTGTTCAGATTTTGAGGAGGAAATTACAACCAATCCTATTCATTTTATAAAAAATATTAATTTAAATCGGTTCAAGATTTGGAGTATTCACGGGACGGGTTATGGTGCCATATATGATCGTCAAATTCATATTGAGTCTCGTATTTTTCTTAGTAATGTTGATCTACATATGCCAAAGAAGACATGCATCAATTTATGA 2184 0.3919 MDANTTCAPSSCGKVTNISHPFRLKDDPQNCGDERYELACENNIAVLALFPGKNYHVESINYNNFTIRLVDPGISEDDCSTLPHYSITRSYLRNEDESRPYEDSQYRQTDFRNGSTQVETVELDYNVVFLECRNPVRDDPRYVDTASCIQQGHHVYAVVGGLTVVELRDGCHVKLVAPCSSSFLAPPRWPKYESLLSCNHNYSYAEIHRMLNYGFELSWVPGACEYKCGLKGSSCAIDQTAQSSLICSEDCYTPLFGKECRLRKVVGKDGGDSFSKEDVLPIIDVGVFTGWFMVPYMVVKYILSLILFFVMLIYTCQRKHASIYENIEEFLQGSNFIPIRYSYKEIKKMTRDFKEKLGEGGFGSVYKGKLRSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDKFIFSKVDSVSLTYQELFEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVTLTAARGTIGYMAPELFYQNIGALSYKADVYSFGMLLMEMASQRRNSNPNAEHSSQFYFPFWIYDQLAKKSDEIEIEILMDEETNKLAKKMFITALWCIQLKPSDRPSMNKVVKMLEGDVASIEMPPRPSYYPNDMIHKDSEINSGVTTSNDSSSCSDFEEEITTNPIHFIKNINLNRFKIWSIHGTGYGAIYDRQIHIESRIFLSNVDLHMPKKTCINL* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3899 727 ProSiteProfiles Protein kinase domain profile. 351 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3899 727 PANTHER RUST RESISTANCE KINASE LR10-RELATED 283 652 IPR045874 GO:0004672
Amo16g3899 727 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 252 IPR045874 GO:0004672
Amo16g3899 727 CDD STKc_IRAK 357 625 - -
Amo16g3899 727 Gene3D Transferase(Phosphotransferase) domain 1 426 631 - -
Amo16g3899 727 Pfam Wall-associated receptor kinase galacturonan-binding 7 71 IPR025287 GO:0030247
Amo16g3899 727 SUPERFAMILY Protein kinase-like (PK-like) 336 624 IPR011009 -
Amo16g3899 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Amo16g3899 727 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Amo16g3899 727 SMART serkin_6 351 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3899 727 Gene3D Phosphorylase Kinase; domain 1 331 425 - -
Amo16g3899 727 Pfam Protein kinase domain 353 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3899 727 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 283 652 - -
Amo16g3899 727 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 5 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3899 Amo-Chr16 150769226 150795064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3899 7 639 Receptor kinase-like Gene Family AT5G38260 35.725 6.11e-107 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3899 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3899 - - ahf:112697889 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3899 16 150769226 150795064 Amo16g3899 16 150769226 150795064 ECH