Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3860 ATGTGGGAAAGGGCTGCGGCAGTGGTGGCGACGCCACGAATTGCAACGAGAACGGCGATACGGTGGTGGCAGGCTGCAAATCGCAACGAGGAGGGCGCTGTGGTGGTCGATATCGCTGCGAATCGTGACAAGAACGGCTCTGTGGCGGTCGGCGGCGTTGCAAATCACGAGGGAGGCGGTGTCCTGTTTGCGGCGATAACAACTAAACCATTGAAACTGAAAAGCCAGTGTGTGATCATTCTCTCTCGTTCTCTTTCAATGGCATTGGAGAATCTTCCTTTGATCATAAAGCTTAAAATTTCTTCCAAACGAAAGCTTGATGTAAATGAAAGCGTCGAGGTCAGGAGCATGGAGGAAGGCTTTCAGGGATCATGGCACCCGGGGAAAGTTGTCCATTCTGGGAGGCTGCAGCGCCATGTCAAATATGATAACATATTACTTGATGATGAGGTGAATTACCTTGTGGAAAAGGTGAGTGTTCCGAAGGTATTGGATGGCGATAGCGACTCTTCAAATTGCAACATTCGTGGTTGGATTAGGCCGGTGCCTCCTAAGAGGGAATTTGAAAGTAGGGAACTTAAATTTGGTCTGTGTGTTGATGTGTACCATGAAGAAGCTTGGTGGGAAGGGGTTATATTTGATCACTGTGATGAAAAGCCAGAGAGGAGTGTATATTTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGCGGATAACTTATGATTGGAATGAGGTTACTGGGGAGTGGCAGTCGAGAGGGAACTGGGTTTTTCTTGAAGTTCTTGAGGAGTATGAGAGGAAGATGTTTATTTCAGTTTCAGTGAAGCAAGTTTGGTATGATGTAAGGACCAAAAAGGACTTCGCCAAGATTAGGGAATGGACTTTTAATGAGAAAGAGTTATGGAAAGAAATGGTAATGGAGGTAGTTGATGATTACTTAAGGCTTACACTAGGAGAAGTTTGCTCCTCCTTAGATCTTCCAAGGAGTTTATTGAGAGAAACACCGGAGATGGAGTCTGTTGAATCTACGGCTAATGTTGACTTCAATCAGGAAGTTGATATGGCCAACTCTTTGGATGTTGCGGATAATGCATTTGGTTCTGATGATGGGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCAAATTTGTTGAACATGGATCAAAAGTGGCCTACCATTCAGGATCAAGGGGTCAAAACTGTCCCTCAGAAAGAACCAGTTATTCCTGTTCAAGAGGTCTCAACTCAGTTTCACAAAGAAATATCCTGCGATGTATTTAATGGAAGAAAACATAGAAAGCTTCGCAGCTCAACTCAACATTGGGTACCTCTCAGATTGTCTGACGTTGAGTTATGTCCTGATGCTATTGAAGAATATGCACAGGCACCTAAAAGAGCTTGCCCGGAAAAAGCACGAAAACATCTTGCGTATCTTGGATGGGAAATTGAATGGAGAAAGCATAAAGCAAGCGACACTTGCTATAGGTACAGATATAGGTCGCCTGATAAACAGGGTGTTTACTACTCTCTCAGTCGGGTTTGTAAGTATGTGGCACAGAACCCTTTGCCGTCCCAAAATGATCAGAGTATGATGCAACTTACAGCTGACAATCATCTTGAACCTATTCTTATTGATCAATCAGAAAAGAGTCAGGATCAGAGTGCGATGCAACTTAGAGATGACAATCATCTTGCACCTATTTGTATTGATCAATCAGAAAAGAGTCATGATCTAAATATTTTGCCACCAATTGTGTCGTCTCCTGTGGATGAAGTTGCAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTAGAATATAGCTTGAATAGATCTGCAATGCGAGGGCCTGACATGAAAGTGGGTAGGTCCAAAGCAAAGAGGCATCTATTGGCTGAAGGATGGAGCTATCACTATGCAAACCCAAGAAATAAAAGACAAGGGTTTGTGTATATCCCTCCAGACAAGGGAAGAAATCTCCCAACACTCCATGCAGCTTGCCATTATTGTATTGAACAAAATGTTGATAAATGGACCAAGCTCGGAATGCAACCTTTGAATGCACAGGATAATGTTGACCAGGTTTGGAGTGCCAATTTATTGCAGAAAGCGTCCCAATGGCTTCGAGAGGAACGCATGGTACCTCCCACAGAAGTCATAACTTCAAGTGGATCAAACCATAGTCGGAAGCGGAAACTCTTGAACAATACAAAGCCCAGCTTATCTAAGCACCAAAGAAATGGATTACCTCGACGCGTGCTGCGATCAAATAAAAGGGTGCAAAAGGTGTCTACCCCTTCTTTGTCACACCAGAAACCTCAGAATGTACTCTCTTGGTTGATAGACAACAACATTCTGTTGCCAAGGTCTAAGGTTTCTTACAAGCCAAAAGGCAGGCTCTGTTCAGCTGAAGGGAGAATAAGCAGAGATGGAATCAAGTGTAATTGTTGTTCGAAAGTATATAGTCTTGCTGGCTTTGAAAGTCATGCTAGTGGCTGTAGTACACGCAGACCGGCTGCAAGTATTATTTTAGAAGATGGTAGATCACTATTAGATTGCCTGATAAAAATGGTGGAAGATCATATGACAAGGGAAGCTATGGCAAAACCACCGAAATATTTTCCTAAAGGCGAGAATGACAATATTTGTTCTGTTTGCCACTATGGTGGGAATCTAATTTTATGCGATCAATGTCCATCTTCATTTCATGTGACATGTCTAGGTGTGGAGAACATTCCTGAAGATGACTGGTTTTGCCCATCATGTCGATGTGCAGTTTGTGGTGAAATAGAAGAAGAGGAGGGAGATTTCCTTGTTTGCATTCAGTGTGAACATAAATATCACTTTAAGTGCCTCAGAACTAAATATGCAACTAACTCGAAAAGATATAGTAAAAACTGGTTCTGCGGAAGGGACTGTGAAAAGATATATTTTGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCATTAACAATCTAACTTGGACATTGGTGAAATATATAAACTCTGAGAGTAGTGATCCGTGTACTACTAAAGGTTACTTATTGCCAGAAAGTTACAGCAAACTCAATGTTGCACTCTCAGTGATGCATGAATGTTTTGAGCCCCTAAAGGATCCTTCGTCTACCAGAGATCTCATGGAAGATGTTTTATTCAGTCGATGGTCAACACTTAATCGATTGAATTTCCATGGTTTCTATACCGTACTTCTGGAGAGAAATGAAGAACTGATAAGTGCAGCAACTGTTAGGGTTTACGGAAAGAAGGTAGCAGAATTGCCTCTTATTGGTACCAGATTACAGTATCGTCGACATGGAATGTGCCGCATTTTGATGAATGAGCTTGAAAAGAGGCTCATGCAGTTGGGAGTGGAGAGGCTCGTTTTGCCTGCTGTTCCTAGTGTTGTAGACACATGGACTGGTTCTTTTGGCTTTGTAAAGATGACAGAGTTCGAGAGGTCGCAATTCTTGGACAATACTTTTTTAGATTTTCAGGATACCATCATGTGCCAGAAGCTGCTGAAGATTCCATCTCCAGAATCGGTTTTGTTAATAGAGTCCCAACAAAGGACACAGCATGTTTTGCCTGGAAACAAGTTAAATTTTGACGCTGATCTGATATCTGAAGTATTACACCAAGCAGAAGAAACTGACAAAGGAGAGAGAAAGAATTCACAAATCCACAATAATTGTGCTGGAAGCAATGATCATTACAGTAATGGTGCCATTGACATTGAGCAAGTCACACCGGTGAATAAACCAAGTCCTGAGGATCCACCGAGCTCTATTGTAACACAAGCTGACAGTAATAATGGCTCACCATATAAGTGCTACTACAAAAGAAGAAAATACACAAAGTTTTAG 3882 0.4235 MWERAAAVVATPRIATRTAIRWWQAANRNEEGAVVVDIAANRDKNGSVAVGGVANHEGGGVLFAAITTKPLKLKSQCVIILSRSLSMALENLPLIIKLKISSKRKLDVNESVEVRSMEEGFQGSWHPGKVVHSGRLQRHVKYDNILLDDEVNYLVEKVSVPKVLDGDSDSSNCNIRGWIRPVPPKREFESRELKFGLCVDVYHEEAWWEGVIFDHCDEKPERSVYFPDLGDEMKIGVHQMRITYDWNEVTGEWQSRGNWVFLEVLEEYERKMFISVSVKQVWYDVRTKKDFAKIREWTFNEKELWKEMVMEVVDDYLRLTLGEVCSSLDLPRSLLRETPEMESVESTANVDFNQEVDMANSLDVADNAFGSDDGIAELPMEEGESSNLLNMDQKWPTIQDQGVKTVPQKEPVIPVQEVSTQFHKEISCDVFNGRKHRKLRSSTQHWVPLRLSDVELCPDAIEEYAQAPKRACPEKARKHLAYLGWEIEWRKHKASDTCYRYRYRSPDKQGVYYSLSRVCKYVAQNPLPSQNDQSMMQLTADNHLEPILIDQSEKSQDQSAMQLRDDNHLAPICIDQSEKSHDLNILPPIVSSPVDEVADEPEFCPQAVLEYSLNRSAMRGPDMKVGRSKAKRHLLAEGWSYHYANPRNKRQGFVYIPPDKGRNLPTLHAACHYCIEQNVDKWTKLGMQPLNAQDNVDQVWSANLLQKASQWLREERMVPPTEVITSSGSNHSRKRKLLNNTKPSLSKHQRNGLPRRVLRSNKRVQKVSTPSLSHQKPQNVLSWLIDNNILLPRSKVSYKPKGRLCSAEGRISRDGIKCNCCSKVYSLAGFESHASGCSTRRPAASIILEDGRSLLDCLIKMVEDHMTREAMAKPPKYFPKGENDNICSVCHYGGNLILCDQCPSSFHVTCLGVENIPEDDWFCPSCRCAVCGEIEEEEGDFLVCIQCEHKYHFKCLRTKYATNSKRYSKNWFCGRDCEKIYFGLHKLLGEPVSVGINNLTWTLVKYINSESSDPCTTKGYLLPESYSKLNVALSVMHECFEPLKDPSSTRDLMEDVLFSRWSTLNRLNFHGFYTVLLERNEELISAATVRVYGKKVAELPLIGTRLQYRRHGMCRILMNELEKRLMQLGVERLVLPAVPSVVDTWTGSFGFVKMTEFERSQFLDNTFLDFQDTIMCQKLLKIPSPESVLLIESQQRTQHVLPGNKLNFDADLISEVLHQAEETDKGERKNSQIHNNCAGSNDHYSNGAIDIEQVTPVNKPSPEDPPSSIVTQADSNNGSPYKCYYKRRKYTKF* 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3860 1293 MobiDBLite consensus disorder prediction 722 752 - -
Amo16g3860 1293 CDD NAT_SF 1075 1135 - -
Amo16g3860 1293 SMART ring_2 887 926 IPR001841 -
Amo16g3860 1293 SMART ring_2 928 980 IPR001841 -
Amo16g3860 1293 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1060 1161 IPR016181 -
Amo16g3860 1293 MobiDBLite consensus disorder prediction 1264 1279 - -
Amo16g3860 1293 Pfam PHD-finger 886 928 IPR019787 -
Amo16g3860 1293 CDD PHD1_AIRE 887 926 - -
Amo16g3860 1293 MobiDBLite consensus disorder prediction 1221 1281 - -
Amo16g3860 1293 MobiDBLite consensus disorder prediction 1232 1252 - -
Amo16g3860 1293 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1035 1180 IPR000182 GO:0016407
Amo16g3860 1293 ProSiteProfiles Zinc finger PHD-type profile. 884 929 IPR019787 -
Amo16g3860 1293 SUPERFAMILY FYVE/PHD zinc finger 928 975 IPR011011 -
Amo16g3860 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 928 980 IPR013083 -
Amo16g3860 1293 SMART PHD_3 886 927 IPR001965 -
Amo16g3860 1293 SMART PHD_3 928 977 IPR001965 -
Amo16g3860 1293 Gene3D - 1036 1179 - -
Amo16g3860 1293 PANTHER PHD ZINC FINGER PROTEIN 99 1222 - -
Amo16g3860 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 878 927 IPR013083 -
Amo16g3860 1293 SUPERFAMILY FYVE/PHD zinc finger 863 927 IPR011011 -
Amo16g3860 1293 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 99 1222 - -
Amo16g3860 1293 Pfam Tify domain binding domain 809 860 IPR032308 -
Amo16g3860 1293 Pfam Agenet domain 110 184 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3860 Amo-Chr16 150440588 150449087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3860 115 524 PHD Transcription Factor Family AT5G58610 32.289 3.34e-63 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo16g3860 Agenet 5e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3860 - - aip:107644722 2250.71