Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3831 ATGGGTGGCTGCAATGGTGGAAGCTTCCCTTGTGACTCATCAGAAGACTTCTCAGCTTTGTTCAACCAACTCCTCTCTCCGCCACCACAGCCCAATTTGACCATAACAAACCGGAGAAGAAGGAGTAGGATTAATGAGAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCAATGTCACTACCAGGAGGATTGAGACCTATGATCCTGCCACATACTGGTGTGGATTTTGATGAAGGTAACAGATTTCAGAACTCTATCAATGGTGGGGCTCCATCATCATATACAGCCGACGAAAGCTTGGTGGCGCGGCCGCCTTTTGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGCTGCTATGCCATCATTGACAAATCTAGCTACTTCAGATAACTCATCAAGCTTTCAATCCTCTATCAAGGTACATGTTTGA 546 0.4304 MGGCNGGSFPCDSSEDFSALFNQLLSPPPQPNLTITNRRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPHTGVDFDEGNRFQNSINGGAPSSYTADESLVARPPFGFHRPCSISNQSAAMPSLTNLATSDNSSSFQSSIKVHV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3831 181 Gene3D - 32 93 IPR036638 GO:0046983
Amo16g3831 181 CDD bHLH_AtPIF_like 38 90 - -
Amo16g3831 181 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 37 180 IPR031066 -
Amo16g3831 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 88 IPR036638 GO:0046983
Amo16g3831 181 SMART finulus 34 83 IPR011598 GO:0046983
Amo16g3831 181 Pfam Helix-loop-helix DNA-binding domain 37 78 IPR011598 GO:0046983
Amo16g3831 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Amo16g3831 181 PANTHER TRANSCRIPTION FACTOR SPATULA 37 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3831 Amo-Chr16 150069760 150071872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3831 35 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 79.452 1.30e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g3831 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3831 - - gsj:114392903 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3831 16 150069760 150071872 Amo16g3831 16 150069760 150071872 ECH