Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3790 ATGAAGAAGGAACATGCTCCATATCCGGGTGCAGTGCGTCCAAGATTTAAACCCAAAACACGTTCAAACAACAAAATTGATAAGCTTGAGGGGCCTATACACCGCCGTCAACTTTGGAGAAACATCAAGGCCCGGTTCAAGAATAATTTGGATATTTTCGACTGGATTCAAAGCAAAGTAAAAAAATACAAAAATGGAAGAAAGTCTATCACGGAACTAAGTTCAGATGTTGCTGTACTTATGCGGGGCCATCCAGATCTTATTAACGAGTTTAACAAATGGATTCCCAGGACTCCTCAAGATTCATGTACATTAACAACATATTTGGAAAACCGTGATTTGCAGGATAAGGACTCTGATGAAATATCTTGGGATATATTTAAAGATATAGATACTGATTCTGATGCCGAGGACAATGATTGGATCTCGGAAGTGACAAGCTCGACTAAGCTTCGTGGATGTGGATGTACAGACCCCCATAGCATTTGGAAAAAGATCAAGGATCGGTTTAAGTACAATATGGAGATTTGCGATTCACTTCAAAATAAAGTGGATAAGTACGTTGATGGAAGAAAGTCTATCAGCCAATTAAGTTTAGACGTTGCTGCACTTTTGCGGGGCCATCCGGATCTTATTGATGAATTTCGCAAATGGATTCCCATTATTTCCGATAATAATTTGCAGGATAAGAGTCCCGGAGATGTATCCGAGACGACCAGTATTAGTTCTACTGACTTTGACTCTGATTCTGACTCTGATTCTGACTTTGGCACTTATAGTGATATGTCAGATGCGATGGATTAA 804 0.3968 MKKEHAPYPGAVRPRFKPKTRSNNKIDKLEGPIHRRQLWRNIKARFKNNLDIFDWIQSKVKKYKNGRKSITELSSDVAVLMRGHPDLINEFNKWIPRTPQDSCTLTTYLENRDLQDKDSDEISWDIFKDIDTDSDAEDNDWISEVTSSTKLRGCGCTDPHSIWKKIKDRFKYNMEICDSLQNKVDKYVDGRKSISQLSLDVAALLRGHPDLIDEFRKWIPIISDNNLQDKSPGDVSETTSISSTDFDSDSDSDSDFGTYSDMSDAMD* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3790 267 Gene3D Paired amphipathic helix 38 96 IPR036600 GO:0006355
Amo16g3790 267 Gene3D Paired amphipathic helix 161 220 IPR036600 GO:0006355
Amo16g3790 267 MobiDBLite consensus disorder prediction 228 267 - -
Amo16g3790 267 SUPERFAMILY PAH2 domain 156 220 IPR036600 GO:0006355
Amo16g3790 267 PANTHER SIN3B-RELATED 164 226 IPR039774 GO:0003714
Amo16g3790 267 PANTHER SIN3B-RELATED 34 102 IPR039774 GO:0003714
Amo16g3790 267 MobiDBLite consensus disorder prediction 228 247 - -
Amo16g3790 267 MobiDBLite consensus disorder prediction 1 26 - -
Amo16g3790 267 ProSiteProfiles PAH domain profile. 25 98 IPR003822 GO:0006355
Amo16g3790 267 Pfam Paired amphipathic helix repeat 61 93 IPR003822 GO:0006355
Amo16g3790 267 PANTHER SIN3A, ISOFORM G 34 102 - -
Amo16g3790 267 PANTHER SIN3A, ISOFORM G 164 226 - -
Amo16g3790 267 ProSiteProfiles PAH domain profile. 147 222 IPR003822 GO:0006355
Amo16g3790 267 SUPERFAMILY PAH2 domain 40 96 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3790 Amo-Chr16 149324830 149328045 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3790 PAH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3790 - K11644 adu:107495749 512.686