Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3728 ATGGATGAAAAGGTGGAAGCTCTTCAAGTGGAATTGCAACGAGTGAAAGAGGAGAATAGTGCTCTAAGATTGATGTTTGAGGTTCTAAGCAACAAATTCAAAAGCCTTCAATCCCAAATTCAAGATATAAACAAGGAATCAGAGCAAATAATAGGCTTCAATAATTCAATGCCTATTGTTGACTCAACAAATTGCAAGAGACCAAGACTAGAGTTTCCGACAGCTAAAAGGCCATTGCAAATCTTTGTCAGAACCAACCCCAAGGATGATACTTTGATGATAAGAGATGGATATCAATGGAGGAAGTATGGACAGAAGGTTACCAAAGACAATGTTTCACCAAGAGCCTACTTCAGGTGTTCCATGGCCCCTAGTTGCCCAGCCAAGAAGAAGGTGCAAAAATGCATACATGACAAGTCTATATTAGTTGCAACTTATGATGGAGAGCACAACCATGCTGCAATTCAAGATTCTTCAATGCCTTCTTCATCCACTCCCAAAGGCTCAGTGGTTAATAAAAATAACAATAATAATAGTAAAAATAATAATGATTTACCTCTTCCAATCTTAGAAAATTATAAAAAATGGTCTCATCAAACAGATTCAATAAGACTATGTTGTGATGATGTTACTATGCAAAAAAGTAACACCAAAATTGAAGAATATGCAAATTCCTTAATCAAAGATCCTGAGTTCACTGCAGCATTGGCTGAAGCAGTTGCACGCACCATCACTGGTCAGAGTAAGGAACAAGACCTAAACCTCAATTTGGGGTTCCAGCAGGGTGATGAAAACTGA 798 0.3784 MDEKVEALQVELQRVKEENSALRLMFEVLSNKFKSLQSQIQDINKESEQIIGFNNSMPIVDSTNCKRPRLEFPTAKRPLQIFVRTNPKDDTLMIRDGYQWRKYGQKVTKDNVSPRAYFRCSMAPSCPAKKKVQKCIHDKSILVATYDGEHNHAAIQDSSMPSSSTPKGSVVNKNNNNNSKNNNDLPLPILENYKKWSHQTDSIRLCCDDVTMQKSNTKIEEYANSLIKDPEFTAALAEAVARTITGQSKEQDLNLNLGFQQGDEN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3728 265 SUPERFAMILY WRKY DNA-binding domain 90 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3728 265 Coils Coil 5 46 - -
Amo16g3728 265 Gene3D WRKY domain 80 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3728 265 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3728 265 MobiDBLite consensus disorder prediction 154 186 - -
Amo16g3728 265 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3728 265 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 244 IPR044810 GO:0003700
Amo16g3728 265 Pfam WRKY DNA -binding domain 96 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3728 265 PANTHER WRKY TRANSCRIPTION FACTOR 49 2 244 - -
Amo16g3728 265 MobiDBLite consensus disorder prediction 155 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3728 Amo-Chr16 148613222 148616022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3728 2 240 WRKY Transcription Factor Family AT1G80840 36.667 3.93e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g3728 WRKY 4.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3728 - - ccaj:109791737 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3728 16 148613222 148616022 Amo20g2693 20 124568038 124570415 PCT
Amo20g2693 20 124568038 124570415 Amo16g3728 16 148613222 148616022 PCT