Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3712 ATGGATTCAACATGCGTTGATACTTCACTCAACCTCAATCTTTCTCCTTCTCCAACTCATGTGAACCCTACTGTGGCAGAAGTAGTTTTGGTTGAAGAGTTACATCGTTTGAGTAGTGAGAACAAGAGGCTTACGGAAACGTTGACTCACATGTGCGTTAGCTATGAAGCTTTGCAGAAGCATTTGACCAAATTGATGAACACATCATCTGATTGTTATAATCATCATCAATCGCGGAAGAGAAAAGCTGAAAGCTATGAAAATTGTAACGATGAGGAGGAGTCATTATTCATCAAAAGGCCTAATAACATTGTTCATAATAATAATAATAATAATAAGGTTTCCAAGGTTCTTGTGAAGACAGATGCATCTGATTCTAGCTTGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTGACTAGAGACAACCCTTCTCCAAGAGCGTACTTTCGTTGCTCCTTCGCCCCAAGTTGCCCAGTGAAAAAGAAGGTGCAAAGAAGTGTTGAAGACCCAACAATACTTGTAGCAACATATGAAGGGGAGCACAACCATGGGCGTAGCCAAACTGAAATTTCACTTGTCTCATCCCAAAGCCATTCAAGTGAAACAATAATCCCTTTAGTTTCTTCACCATCATCACGTATTACGTCATCTCCAACTACTCTTGACTTGGTCAAAAATTCAATAAGTTCCGTTGACATTGATCACAATGCTCAAAACAAGTCTTCTTCTTCTTCTTATATCCATAAGTTTTTGGTTCAAGAAATGGCCACTTCCTTGACAAGTGATCCTAACTTCACGGCAGTACTTGCCACTGCAATTTCAGGAAAAATTCTAGAACAGACTTCTCTGGAAAAATTGTGA 876 0.3916 MDSTCVDTSLNLNLSPSPTHVNPTVAEVVLVEELHRLSSENKRLTETLTHMCVSYEALQKHLTKLMNTSSDCYNHHQSRKRKAESYENCNDEEESLFIKRPNNIVHNNNNNNKVSKVLVKTDASDSSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSVEDPTILVATYEGEHNHGRSQTEISLVSSQSHSSETIIPLVSSPSSRITSSPTTLDLVKNSISSVDIDHNAQNKSSSSSYIHKFLVQEMATSLTSDPNFTAVLATAISGKILEQTSLEKL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3712 291 Gene3D WRKY domain 113 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3712 291 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 285 IPR044810 GO:0003700
Amo16g3712 291 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 285 - -
Amo16g3712 291 SUPERFAMILY WRKY DNA-binding domain 129 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3712 291 Pfam WRKY DNA -binding domain 132 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3712 291 SMART WRKY_cls 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3712 291 ProSiteProfiles WRKY domain profile. 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3712 Amo-Chr16 148287442 148289733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3712 3 290 WRKY Transcription Factor Family AT1G80840 43.131 3.23e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g3712 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3712 - - gmx:100810978 291.582