Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3705 ATGGCAAACTGTCACCGGAACAACGTCGGATCCCTCGTTCTCGGCCACCACCCTACAAAGTCCTCCGCCGCTACCGTTAGTGGCAACGTCCGCCTGTGGAACTCCCTCTCCGCCGCCTCCTTCCGCCGCATTATCTTCGACGCCCTCAGCTGCGGTGGCGCCGCTTACCGCCGGAATAATCACACCGACTCAGCCTCCTCCACCGACGGATCCGATTCCGACTTCGAATGCCCGAAACCTAACCCTAACACGAAGCGCAATGTGAGGTCCGAGAAGCTCTCGGATCTCCTGAGCATGGCGGATTCGGAGGTGGACGCGGAAACCGAGACGAAGAAGAAGGAGGAGGCTCTTGACGACCTGAAGCGCCTCGTGTCGGAGCTTCAGGCGGAGGATTCGCCTCCGGTAAAGCGAGTAGCTGCAGCTTCCGCCGTGAGGAGGCTGGCGAGGGAGGACGCTGAGGTTAGAGTGACATTCGCAATGCTCGGAGCGATTCCGCCGCTTGCAGCCATGCTCGATTCAGAAGACCTCGATTCTCAGGTAGCTTCGCTCTACGCGTTGCTTAACCTTGGAATCGGAAACGATGCAAATAAAGCTGCTATTGTGAAAGTTGGGTCTGTACACAAGATGTTGAAGCTAATTGAATCTCCAGATTCTGTGGAAACATCAGTTTCAGAAGCAATAGTTGCAAACTTTCTCGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCTGCAGCAGTACCATTCCTAGTTAGAACCCTCCAGAATTTAGATAATAAAACAAGCTCCCAAGCCAAACAAGATGCTCTCAGAGCAATGTACAATCTTTCAATCTTCCCAGGCAATGTTTCATTCATTTTGGAAACCAACTTGGTCCCATTTCTGATAAACTCCGTAGGAGATATGGAAGTAACCAACCGAGCCCTCGCAATCCTAAGCAACTTGGTGTCAACAAGAGAAGGTAGGAAGGCCACTAGTGCCGTCCCGGATGCTTTCCCTATCCTTGTGGATGTGTTGAATTGGACCGACTCACCGGAATGCCAAGAAAAGGCATCTTATGTTTTGATGATAATGGCGCACAAGTCTTATGGCGATAGGCAGGCCATGATTGAGGCTGGGATTGCGTCGTCACTCCTTGAGTTGTCCCTTCTTGGCACCACATTGGCACAGAAAAGGGCCTCAAGGATATTGGAATGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCAGGGAGCTTTGGAGGGAATTTAGGCGCAACGGTATCCGCCCCAATCTGTGGATCGTCATCGTCTTGTGCAAAGATGGACGGAGGGGGAAAGGATGGTTCGGACGAGGAGGAGGAGATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAGTTAGTCCAGCAGAGTCTGCAAAACAATATGAGGAAGATTGCTAAAAGGGCCAATTTGCCTCAAGATACTGTTCCTTCAGATCATTTTAAATCACTCACTGCAAGTTCAACATCGAAGAGCCTGCCATTTTGA 1515 0.5076 MANCHRNNVGSLVLGHHPTKSSAATVSGNVRLWNSLSAASFRRIIFDALSCGGAAYRRNNHTDSASSTDGSDSDFECPKPNPNTKRNVRSEKLSDLLSMADSEVDAETETKKKEEALDDLKRLVSELQAEDSPPVKRVAAASAVRRLAREDAEVRVTFAMLGAIPPLAAMLDSEDLDSQVASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPDSVETSVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLQNLDNKTSSQAKQDALRAMYNLSIFPGNVSFILETNLVPFLINSVGDMEVTNRALAILSNLVSTREGRKATSAVPDAFPILVDVLNWTDSPECQEKASYVLMIMAHKSYGDRQAMIEAGIASSLLELSLLGTTLAQKRASRILECLRVDKGKQVSGSFGGNLGATVSAPICGSSSSCAKMDGGGKDGSDEEEEMMSEEKKAVKQLVQQSLQNNMRKIAKRANLPQDTVPSDHFKSLTASSTSKSLPF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3705 504 MobiDBLite consensus disorder prediction 478 504 - -
Amo16g3705 504 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 504 - -
Amo16g3705 504 Gene3D - 259 413 IPR011989 -
Amo16g3705 504 Coils Coil 445 465 - -
Amo16g3705 504 MobiDBLite consensus disorder prediction 485 504 - -
Amo16g3705 504 Gene3D - 112 258 IPR011989 -
Amo16g3705 504 MobiDBLite consensus disorder prediction 61 84 - -
Amo16g3705 504 Coils Coil 103 130 - -
Amo16g3705 504 MobiDBLite consensus disorder prediction 435 458 - -
Amo16g3705 504 SMART arm_5 193 236 IPR000225 GO:0005515
Amo16g3705 504 SMART arm_5 151 191 IPR000225 GO:0005515
Amo16g3705 504 SMART arm_5 324 363 IPR000225 GO:0005515
Amo16g3705 504 SMART arm_5 237 281 IPR000225 GO:0005515
Amo16g3705 504 SMART arm_5 282 320 IPR000225 GO:0005515
Amo16g3705 504 SUPERFAMILY ARM repeat 119 403 IPR016024 -
Amo16g3705 504 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g3705 504 MobiDBLite consensus disorder prediction 61 87 - -
Amo16g3705 504 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3705 Amo-Chr16 148175458 148179200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3705 136 410 U-box Gene Family AT1G67530 30.142 1.32e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3705 - - mtr:MTR_1g014420 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3705 16 148175458 148179200 Amo20g2672 20 123943907 123946258 PCT
Amo20g2672 20 123943907 123946258 Amo16g3705 16 148175458 148179200 PCT