Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3701 ATGGCAGTGATGGATGAAAAAGATCATCATTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGATCGAACATTAACAACCACAAACAATGCAATAACAGCATTGAAGCTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAAATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTGGTGAAACCTGTTAGAATTGAGGAGCTGAAGAATATTTGGCAGCATGTAATTAGGAGGAACAAGCATGATTCCCAGGAGCCAGAAAAACCTAGTAACAACCACGAAAATCCTGATTCAGATCAGAGTTCAAAGGCAAATAAAAAGAGAAAGGAACAAGAAGATGAGGAGGAGGAGGAGGAGGATGAGAATGACCATGACAACGGTGATGATCCGTCGGCGCAAAAGAAGCCTCGCGTGGTTTGGTCCGTCGACTTGCACCACAAATTTGTCACTGCCGTCGAGCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAAGAGTGAGCAACATGTCAAACCAACAACACTCTAACATTGGATCAGCCTTCAGCAGTGCAGACACATCATATCTGAGAATGAATCCTCTAAGCGGAATTGGACAATTACAAACACTCAATAATAACTCTGGTTATGGCTTAAGATCTTTTTCACCTTCTAACATGCTTAATAGATTCAACACTCCTTCAGCCCTCAATGCTCATGGTTTCAATTCCAATGATACCCAATTTCAGTTCCCATCTTCCGGCTTGCTCGGCCGCGGCCGCAGCAATAACAATCAGACTTATCTCTCCGGAGGAGGACTTAATTCTGTTCCAAACTTGAGCACTATCTTTGATTCTAAACAGAGTTTTGTTAGACAGAAACCAAGCTCTCCCATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACAGAATCATCAAGGTGGAATCTATGATAATATTCCAAATTCTGTAGGATCTTCTTCCCAAGAACAAATTTCATTCCCTTCTTTACTTGATCATCATCATGGTAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACACTTTGATGAATTCTTCAACTTTTCAAGGTGGGAATCTTAGTGGTGCTTCATCAATCACTTCACTCTCTAGCCAATCCCATGATTCATTCACTGATTTGAATTTCCAAGGAGTGAATTTCACCAACAATAACAATAGTAACAATGTGCAATTTCAAGGGTGGAATAGTAACAATAATAACAATAATCAGAATGGAAATTACCATGCATTGAGTGGCCTTATTGATCCATTTTCAAATTCAAGCTTCAACAGAAACTTGGATTTTGATTTTTGTGATGCATCGCAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAGCCACATCAGTTGTACAAGACTCGGAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGACTTTGTCAATGAAATTATGAAACAGAAACAAGACAAGATAAAATTACCAGAAGGAGACTTCTTGTGTGACAATTATTCTACTGGTGGAACATCTATGTGA 1731 0.3911 MAVMDEKDHHFPKGMRVLAVDDDRTLTTTNNAITALKLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVINDDPRVMMKGIMHGACFYLVKPVRIEELKNIWQHVIRRNKHDSQEPEKPSNNHENPDSDQSSKANKKRKEQEDEEEEEEDENDHDNGDDPSAQKKPRVVWSVDLHHKFVTAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRVSNMSNQQHSNIGSAFSSADTSYLRMNPLSGIGQLQTLNNNSGYGLRSFSPSNMLNRFNTPSALNAHGFNSNDTQFQFPSSGLLGRGRSNNNQTYLSGGGLNSVPNLSTIFDSKQSFVRQKPSSPILGVSNNGLILEQNHQGGIYDNIPNSVGSSSQEQISFPSLLDHHHGNSCNNDIWSNECNTLMNSSTFQGGNLSGASSITSLSSQSHDSFTDLNFQGVNFTNNNNSNNVQFQGWNSNNNNNNQNGNYHALSGLIDPFSNSSFNRNLDFDFCDASQMKHDGVIDLTEDSSLKPHQLYKTRNTHISNNAGSLEDFVNEIMKQKQDKIKLPEGDFLCDNYSTGGTSM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3701 576 ProSiteProfiles Response regulatory domain profile. 1 112 IPR001789 GO:0000160
Amo16g3701 576 Pfam Myb-like DNA-binding domain 173 223 IPR001005 -
Amo16g3701 576 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 171 224 IPR006447 GO:0003677
Amo16g3701 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 550 IPR045279 GO:0009736
Amo16g3701 576 Coils Coil 137 159 - -
Amo16g3701 576 MobiDBLite consensus disorder prediction 115 170 - -
Amo16g3701 576 PIRSF RR_ARR_type-B 1 573 IPR017053 GO:0003677|GO:0003700|GO:0009736
Amo16g3701 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 8 550 - -
Amo16g3701 576 Gene3D - 13 132 - -
Amo16g3701 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Amo16g3701 576 MobiDBLite consensus disorder prediction 115 148 - -
Amo16g3701 576 CDD REC_typeB_ARR-like 17 112 - -
Amo16g3701 576 SUPERFAMILY Homeodomain-like 169 228 IPR009057 -
Amo16g3701 576 SUPERFAMILY CheY-like 13 119 IPR011006 -
Amo16g3701 576 SMART REC_2 15 108 IPR001789 GO:0000160
Amo16g3701 576 Pfam Response regulator receiver domain 21 106 IPR001789 GO:0000160
Amo16g3701 576 Gene3D - 167 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3701 Amo-Chr16 148120935 148124932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3701 10 299 Response Regulator Gene Family AT2G25180 52.960 1.88e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo16g3701 Response_reg 1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3701 - K14491 adu:110273068 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3701 16 148120935 148124932 Amo16g3701 16 148120935 148124932 ECH