Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3700 ATGAGTCCTCCAGCTACACCGAACATGGAAGAAGAACCAAAGCCTTCCGTTCCAGCCGTTGATGATGGCGACCAAGCTGAGTCTCGATTCGCCCACTTTTGCAAGAATGGACTAGTATTGGATGAGAAAAGCCTTAAAGAAGCAATGAATCTGCTTGCAGGAACCAAACATCTTTTACAGGCAAATGTTTCATCAATGGGGAATTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTATACTCTATTAAGAAATTGACTCAGAAAAATGAGGCGGGTGGGAAGCAAGAGATGGATAACACTGGGCTTACCTTGTGCGGTATATTGAGAGCAGCAAAGCTCAAGTATTACACTATCCTTTCTGGTTTACAAGTTTATAGTCTGTTCCAATATTCACTGTTATCATTTTTTGTGTTTAACAGCATTGCAGATTTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGTAATATATATGGCTCAGATTGGGAGAGCAGGCTTGAGGCAAAGGAGATGCATGCAAATGCCATTCACCTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAGTGGATAATGTTGAAAAGAACTCATCTGTGGCTGTTCAAGCATCTGACTACCATCGCTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTTAGCCGTTTTAAAGATTTGGTGACTTGCACCAATGGTTTGATTTCTATCCTGGCAATCTTGATTATTCATGTTCCTGCGCGATTTCGAAATTTCAACATTAATGACTCTTCACGCTTCGTTAAGAAGAGTAACAAAGGTGTGGACCTCCTGGCGTCTCTCTGCAATATTTATAACAATTCAGAAGATGAATTGAAGAAAACCATGGAGAAAACCAATAATTTAATCGCCAATATATTGAAGAAGCAACCTTGCTTGGCATCTCAATGTGAAGCTGAAAACCTGGAGAATTTTGATAGAGATGGGTTGACCTATTTTAGAGATTTGATGGAGGAGTCATCTCTTCCTTCCAGTTTAAATATCTTGGAGAAAGATTATGATGACATGATTCGCAACAAGGGTGAATTAGATGAAAGGCTGTTCATCAATGAAGATGACAGCTTGTTAGCTTCTGGAAGTTTGTCTGGGGGTTCTGTTTCTGCAAGTGGTGTAAAGCGGAAATTTGATACAATGGCATCACCCGTAAAGACTATTACAAGTCCACTCTCGCCCCACCGCTCCCCCTCATCTCATGCTAATGGCATTCCAGGCAGTGTAAATTCAAAGATGGCAGCGACTCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGTAGTCTCATATCACCACTTGCATCAAAGCCATCACAAGAGCTTGAGCGTTTCTTGACATCATGTGACAGGGATGTCACAGGTGATGTGGTGCGCAGGGCACAGATCATATTGCAGGCAATATTTCCCAGCAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCGAGCCTGATGGACAATATTTGGGCAGAGCAACGTAGATTGGAGGCCTTGAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAATCCCAAATACTACATGCAACTAATTTAACATCACTACTAACTAATGAGAGGTTCCATCGGTGTATGCTTGCCTGTTCTGCGGAACTTGTTCTGGCAACTCATAAGACTGTAACAATGCTGTTCCCTGCAGTATTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTAAGACGACATTTGAATTCCTTGGAAGAACGACTCTTGGAGAGTATGGTATGGGAAAAGGGTTCATCGATGTATAACTCTTTAGCTGTCGCTAAACCTTCACTTGCTGCGGAAATAAATCGTCTCGGACTATCAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAATTTCTCTTGTGGAGGTTTGCCTCCTGTGCCTTCCTTGCCTAAGTTCGAGACGTCACCAACTCAGAATGGGGATACAATGTCACCAAAACGACTCTGTACAGAGTATCGAAATTCTTTTGCTTCACCAGTGAAAGATCGCCTTCTTCCCTTCAGCAATCTTAAATCAAAGCTACCCCCACCTCCTCTACAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATTAATATATTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGTTACAGTTATCACAACAGATAAGGGAGAATGTATACTGTCTTTTCCAGCAAATCCTTAATCAACGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTTTATGGAGTTGCTAAGATTTCTCAACTGAATCTAACTTTCAAGGAGATCATATACAACTATAGAAAGCAACCACAGTGCAAACCACAAGTCTTTCGCAATGTATTTGTGGATTGGTCATTGACACGCCGAAATGGGAGAAGAGGACAGGAGCATGTGGATATCATTGCATTCTACAATGAAGTATTCATTCCCACTGTGAAACCACTTCTAGTAGAACTTGGGCCTGCAGAAATCACTACAAAAAACAGCCGGATGCCTGAAGTGAATGTTAAAAATGATGCTCAATGTCCTGGATCTCCTAAAATATCATCTTTCCCAAGTCTTCCAGATATGTCACCAAAAAAGGTGTCTGCCACACGCAATGTATATGTCTCTCCACTACGATCATCCAAGATGGATGCTCTAATATCACATAACTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACCCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATAATCGTTTGAATGGCAACCGGAAGGTCAGAGGTTCGCTCAATTTCGATGACATGGATGTCGGCTTGGTTAGTGACTCAATGGTTGCGAACAGCCTCTATCTGCAAAATGGAAGTTGTGCATCGTCGTCGGGTGCACCCATGAAGTCCGAGCAACCTGACTCTTAA 3117 0.42 MSPPATPNMEEEPKPSVPAVDDGDQAESRFAHFCKNGLVLDEKSLKEAMNLLAGTKHLLQANVSSMGNSEEAERYWFAFILYSIKKLTQKNEAGGKQEMDNTGLTLCGILRAAKLKYYTILSGLQVYSLFQYSLLSFFVFNSIADFFKELPQFVVKAGPILSNIYGSDWESRLEAKEMHANAIHLKILSKYYKRVFGEFFVAVDNVEKNSSVAVQASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSNKGVDLLASLCNIYNNSEDELKKTMEKTNNLIANILKKQPCLASQCEAENLENFDRDGLTYFRDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDSLLASGSLSGGSVSASGVKRKFDTMASPVKTITSPLSPHRSPSSHANGIPGSVNSKMAATPVSTAMTTAKWLRSLISPLASKPSQELERFLTSCDRDVTGDVVRRAQIILQAIFPSSPLGERCVTGSLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVAKPSLAAEINRLGLSAEPMPSLDEIAMHINFSCGGLPPVPSLPKFETSPTQNGDTMSPKRLCTEYRNSFASPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIIYNYRKQPQCKPQVFRNVFVDWSLTRRNGRRGQEHVDIIAFYNEVFIPTVKPLLVELGPAEITTKNSRMPEVNVKNDAQCPGSPKISSFPSLPDMSPKKVSATRNVYVSPLRSSKMDALISHNSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDDMDVGLVSDSMVANSLYLQNGSCASSSGAPMKSEQPDS* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3700 1038 PANTHER BNACNNG22930D PROTEIN 142 1025 - -
Amo16g3700 1038 PANTHER BNACNNG22930D PROTEIN 9 120 - -
Amo16g3700 1038 Pfam Domain of unknown function (DUF3452) 142 258 IPR024599 -
Amo16g3700 1038 Gene3D - 219 377 - -
Amo16g3700 1038 SUPERFAMILY Cyclin-like 448 643 IPR036915 -
Amo16g3700 1038 Coils Coil 292 316 - -
Amo16g3700 1038 MobiDBLite consensus disorder prediction 412 435 - -
Amo16g3700 1038 Gene3D - 443 631 - -
Amo16g3700 1038 SMART RB_A_2 440 641 IPR002720 GO:0005634|GO:0051726
Amo16g3700 1038 SUPERFAMILY Cyclin-like 757 926 IPR036915 -
Amo16g3700 1038 MobiDBLite consensus disorder prediction 913 933 - -
Amo16g3700 1038 Gene3D - 715 910 - -
Amo16g3700 1038 SMART DUF3452_2 87 258 IPR024599 -
Amo16g3700 1038 Coils Coil 353 373 - -
Amo16g3700 1038 Pfam Retinoblastoma-associated protein A domain 440 641 IPR002720 GO:0005634|GO:0051726
Amo16g3700 1038 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g3700 1038 Pfam Retinoblastoma-associated protein B domain 759 886 IPR002719 GO:0005634|GO:0051726
Amo16g3700 1038 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 142 1025 IPR028309 GO:0006357|GO:0051726
Amo16g3700 1038 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 9 120 IPR028309 GO:0006357|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3700 Amo-Chr16 148103362 148111272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3700 9 1038 Core Cell Cycle Gene Families AT3G12280 67.112 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Amo16g3700 RB_A 1.2e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3700 K04681 - gmx:100779266 1696.79