Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3689 ATGAAGCTTCTTACAATAATGCTTCTCATGTTCTTCCTTATTCTCCACAAACCAAGTTTCGTTCTTTCTTCAACAATTGATTACCCTTTTGCTCCTTCACCTCAAATTCAAGTCATTTCTACATCAATGGCTTCTTCACCTTCATCCCCTGGTTTTGAACAAGAGAATGAAAAGCAGGGCATGGATTCACACAGGAAAATGGTGATAGCTTTTGTTGTTGCCAGCACTGCACTTAGTGCACTCATTTTATGCCTCTTATTCTTCTGGATTTATTATCATACAAGCCATTCATCAAAATCCAAAAGGACAAGTGTTCAAAACTCAGGGCAAGATGCTGAGAAAGGGGCATATTTGAGCAAATTTAGTTCTATAAAGATGGTGGGTAAGAAGGGTTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAGGGCACAAATAATTTCAAGGAGAGTAATATTTTGGGGGAGGGTGGTTTTGGATGTGTTTATAAGGCTACTTTGGATGATAATTTGGATGTTGCTGTTAAAAAACTTCACTGTGAAAATCAATATGCTGAGACAGAATTTGAGAATGAGGTGGAATTGTTAAGTAAAATTCAGCATCCCAACATAATTTCTTTATTGGGTTGTAGCAATGATGGCATTACAAAGTTTATTGTCTATGAATTGATGCACAATGGATCATTGGAAACCCAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAAAATATCTGCATGAGCACTGTTACCCTGCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCAAAGATTTGTGATTTTGGGCTTGCTATAACTGATGGGTCCCAAAATAAGAACAACATCAAGCTTTCAGGCACATTGGGGTATGTAGCTCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCTTTTGGAGTTGTGCTTTTGGAGCTTCTATTAGGAAGAAAGCCTGTGGAGAAACTGGCACCATCACAATGCCAATCTATTGTCACATGGGCCATGCCACATCTCACAGACAGATCCATGCTTCCAACTATTGTGGACCCTGTGATTAAGGATGCAATGGATCTCAAGCACTTGTACCAGGTTGCTGCCGTGGCTGTGTTGTGTGTGCAACCGGAGCCGAGTTACCGGCCGCTGATTGCGGATGTTCTGCACTCACTTATTCCTCTTGTACCTGTTGAGCTTGGAGGAACACTCAGAGTTCCACAAGTGACACAACAAGTTTTACCAATTGATGATGTTGCTGAGAATTCTAGTCACTCAATTTGA 1362 0.3957 MKLLTIMLLMFFLILHKPSFVLSSTIDYPFAPSPQIQVISTSMASSPSSPGFEQENEKQGMDSHRKMVIAFVVASTALSALILCLLFFWIYYHTSHSSKSKRTSVQNSGQDAEKGAYLSKFSSIKMVGKKGCVPIIDYKQIEKGTNNFKESNILGEGGFGCVYKATLDDNLDVAVKKLHCENQYAETEFENEVELLSKIQHPNIISLLGCSNDGITKFIVYELMHNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDANFNAKICDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPSQCQSIVTWAMPHLTDRSMLPTIVDPVIKDAMDLKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLRVPQVTQQVLPIDDVAENSSHSI* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3689 453 Gene3D Transferase(Phosphotransferase) domain 1 224 423 - -
Amo16g3689 453 SUPERFAMILY Protein kinase-like (PK-like) 129 418 IPR011009 -
Amo16g3689 453 PANTHER OS01G0750732 PROTEIN 37 439 - -
Amo16g3689 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Amo16g3689 453 CDD STKc_IRAK 154 421 - -
Amo16g3689 453 Pfam Protein tyrosine and serine/threonine kinase 151 360 IPR001245 GO:0004672|GO:0006468
Amo16g3689 453 Gene3D Phosphorylase Kinase; domain 1 108 223 - -
Amo16g3689 453 ProSiteProfiles Protein kinase domain profile. 148 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3689 453 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Amo16g3689 453 PANTHER BNAA04G14780D PROTEIN 37 439 - -
Amo16g3689 453 SMART serkin_6 148 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3689 Amo-Chr16 147903293 147909295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3689 3 364 Receptor kinase-like Gene Family AT1G80640 46.448 4.99e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Amo16g3689 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3689 - - gmx:100812044 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3689 16 147903293 147909295 Amo06g2826 06 93499379 93502803 hybridization
Amo16g3689 16 147903293 147909295 Amo10g2174 10 76581685 76585259 PCT
Amo16g3689 16 147903293 147909295 Amo20g2639 20 122675548 122679141 PCT
Amo10g2174 10 76581685 76585259 Amo16g3689 16 147903293 147909295 PCT
Amo20g2639 20 122675548 122679141 Amo16g3689 16 147903293 147909295 PCT