Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3686 ATGGTGAATTGGCAGGTTGGAAGATGGAAGGCGGAGATACTGGCGCACCCTCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCACAGCTGGCACAGTCACAGAATGTAGTCTCCAAGTACTCTGCCTTCGGCCATGGCGTTGGAGATGACAAAGAACTCGACCAGTTCATGTCGCACTACGTTTTGCTTCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCTACAATGTCCGACGACGAAGATGATCAAGTTGATAGTGAGGCCAATCTGTTTGACGGTAGTTTGGATGGAACAGATAGCATGGGGTTTGGCCCTCTTATTCCGACAGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAAAATGGTTACAAGGAGAAAATTGTTGACATAAGAGAAGAAATTTTGCGCAAGAGACGGGCAGGAAAACTCCCCGGCGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCCCATTCCAAATGGCCTTACCCCACAGAGGAAGATAAGGCAAGGCTGGTGCAGGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGAAACAATGCAGGTGATAACAATGCTGATCGGTATATGTAA 843 0.4852 MVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVSKYSAFGHGVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSEANLFDGSLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRNNAGDNNADRYM* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3686 280 Pfam KNOX2 domain 63 113 IPR005541 GO:0003677|GO:0005634
Amo16g3686 280 SMART KNOX1_2 7 51 IPR005540 GO:0003677|GO:0005634
Amo16g3686 280 Gene3D - 192 253 - -
Amo16g3686 280 ProSiteProfiles ELK domain profile. 171 191 IPR005539 GO:0003677
Amo16g3686 280 SUPERFAMILY Homeodomain-like 193 257 IPR009057 -
Amo16g3686 280 SMART HOX_1 193 258 IPR001356 GO:0003677
Amo16g3686 280 Pfam KNOX1 domain 10 50 IPR005540 GO:0003677|GO:0005634
Amo16g3686 280 Pfam ELK domain 171 192 IPR005539 GO:0003677
Amo16g3686 280 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 271 - -
Amo16g3686 280 MobiDBLite consensus disorder prediction 248 280 - -
Amo16g3686 280 MobiDBLite consensus disorder prediction 248 265 - -
Amo16g3686 280 SMART ELK_2 171 192 IPR005539 GO:0003677
Amo16g3686 280 CDD homeodomain 194 255 IPR001356 GO:0003677
Amo16g3686 280 ProSiteProfiles 'Homeobox' domain profile. 191 254 IPR001356 GO:0003677
Amo16g3686 280 Pfam Homeobox KN domain 211 250 IPR008422 GO:0003677|GO:0006355
Amo16g3686 280 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 2 271 - -
Amo16g3686 280 SMART KNOX2_2 59 114 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3686 Amo-Chr16 147776910 147780997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3686 1 268 Homeobox Transcription Factor Family AT5G25220 88.971 6.55e-179 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo16g3686 KNOX2 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3686 - - zju:107421143 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3686 16 147776910 147780997 Amo16g3686 16 147776910 147780997 ECH