Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3683 GGGTGCATATTTTTCTTATGGTACATATGCACTTGCAGCTTTGTTCAAGAATGCATGGGAATCTCCATCCAAAATTCAGACGCATTCTGCTCTGTGTGCCAAAACTCAAGCAATGATGACATTAACTGTTTGTTGGAGTGTAGTCGCTGTCTAATTAGAGTTCATCAGGCTTGCTATGGAATCTCCACATTACCTAAAAAAGGCCGTTGGTGTTGTAGACCATGCCGAACAAACTCAAAAGATATTGCTTGTGTCCTGTGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACACAGAATCGCACAATGGTGAAAAGCCTCTTAAAAGCGTGGAGTATTGAAAAAGGTGGCATGTCTAAGCATAGTACTACACCTGAACTTTTTGAGAAGGAAACAGATGTATTTGATTCCACAAAATCTGAACTAAAATTTGACCAAACATGTGGTTTGAAGTCTGGGAATGTTGAGATCTCAAGATCAGACCAGTTGAAAGTTGAGATGTCAACAAATCAAATGCAAAATGTTCCTTACAATATTTTAAAGGTTCATAACAGCATTACAGCAGGAGTTCATGATACATCTGTAAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCGAATGTTAATACAATGAGTGCTTTTGATGTATCTGGTGTTGCAGTTCCCAGAGAAGATGTGGTTTGTTCCATCTGCAACCGCTGGGGTGGTTCTTGTATAGAGTGCAGGATTGTCAATTGTTTGGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAATGTGAGACTGAAGGCGATGATGATGAGAACGTTGGATTTTATGGAAGATGTATGCTTCATGCTGTTGACCCTAGATATCAGTCCAAGTATGATCCTGTTGATGATATAGATAGCTTAGAAGAAAGGGAATTCACCTGTGCCAGGACAGAGGGTTACAAGGGCTGTAAACGGGATGGTTTCCATAGATATTGTTACAGTGCCTTAAAGGGAAAGGGAGGAAGTGGATGCCTTGTTCCTGAAGAACAGTTAAATGCTTGGATTCACATTAATGGGCAGAAATCGTGTCCACAAAGACTCCCTAAACACGCATCAGATATTGAGCATGATTGTCGGAAGGAATATGCTCGGTACAAGCTAGCAAAGGGCTGGAAACACCTTGTTGTTTACAAATCTGGAATTCATGCCCTTGGTCTTTACACTTCTCGATTCATTTCCCGTGGTGAAATGGTTGTTGAGTATGTTGGCGAAATTGTGGGGTCACGGGTAGCTGATAAGAGAGAGATTGAATATCAATCTGAAAGAAAACTTCAGTACAAGGGTGCTTGCTACTTCTTCAGGATTGACAAAGAACATATTATTGATGCCACAAAGAAAGGGGGCATAGCCCGTTTTGTTAATCACTCGTGCTTGCCGAATTGCGTGGCGAAAGTGGTTACTATAAGGCATGAGAAGAAGGTTGTCTTTTTTGCAGAGAGGGACATATATCCTGGTGAAGAAATAACATATGATTACCACTTTAACAACGAAGATGAAGGAAAGAAGATTCCATGTTATTGCAATTCCAAAAATTGCAGGCGCTATCTTAACTGA 1617 0.4119 GCIFFLWYICTCSFVQECMGISIQNSDAFCSVCQNSSNDDINCLLECSRCLIRVHQACYGISTLPKKGRWCCRPCRTNSKDIACVLCGYGGGAMTRATQNRTMVKSLLKAWSIEKGGMSKHSTTPELFEKETDVFDSTKSELKFDQTCGLKSGNVEISRSDQLKVEMSTNQMQNVPYNILKVHNSITAGVHDTSVKQWIHMVCGLWTPGTRCPNVNTMSAFDVSGVAVPREDVVCSICNRWGGSCIECRIVNCLVKFHPWCAHQKNLLQCETEGDDDENVGFYGRCMLHAVDPRYQSKYDPVDDIDSLEEREFTCARTEGYKGCKRDGFHRYCYSALKGKGGSGCLVPEEQLNAWIHINGQKSCPQRLPKHASDIEHDCRKEYARYKLAKGWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGSRVADKREIEYQSERKLQYKGACYFFRIDKEHIIDATKKGGIARFVNHSCLPNCVAKVVTIRHEKKVVFFAERDIYPGEEITYDYHFNNEDEGKKIPCYCNSKNCRRYLN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3683 538 SMART PostSET_3 522 538 IPR003616 -
Amo16g3683 538 CDD ePHD 192 277 - -
Amo16g3683 538 Pfam PHD-finger 42 76 - -
Amo16g3683 538 ProSiteProfiles Post-SET domain profile. 522 538 IPR003616 -
Amo16g3683 538 SMART set_7 393 520 IPR001214 GO:0005515
Amo16g3683 538 Pfam PHD-zinc-finger like domain 191 274 - -
Amo16g3683 538 SUPERFAMILY SET domain 392 538 IPR046341 -
Amo16g3683 538 SMART PHD_3 234 290 IPR001965 -
Amo16g3683 538 SMART PHD_3 29 76 IPR001965 -
Amo16g3683 538 ProSiteProfiles Extended PHD (ePHD) domain profile. 176 290 IPR034732 -
Amo16g3683 538 ProSiteProfiles SET domain profile. 393 514 IPR001214 GO:0005515
Amo16g3683 538 ProSiteProfiles Zinc finger PHD-type profile. 27 78 IPR019787 -
Amo16g3683 538 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 23 538 - -
Amo16g3683 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 290 IPR013083 -
Amo16g3683 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 83 IPR013083 -
Amo16g3683 538 Gene3D SET domain 291 538 IPR046341 -
Amo16g3683 538 Pfam SET domain 406 513 IPR001214 GO:0005515
Amo16g3683 538 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 23 538 - -
Amo16g3683 538 CDD SET_SETD1-like 395 534 - -
Amo16g3683 538 SUPERFAMILY FYVE/PHD zinc finger 25 80 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3683 Amo-Chr16 147753332 147758418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3683 395 538 C2H2 Transcription Factor Family AT2G23740 33.939 7.66e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo16g3683 SET 3.4e-19 No_clan