Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3678 ATGGGGAAGCCAACAGGGAAAAAGAAAGATCATGAAAGTCCCAAGGCAAAAGATGCTAAGGTTCCTGCTACTACCAAGACTATGGACCGTAGCGCCTCAAAGGCCCTTGATGATGACACTGCCATGTTCATCAACATGGCACAAGAGCTCAAGGAAGAAGGCAACAGGCTATATCAGAAGAAGGATCATGAAGCTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCCTACCGAAGAATCACATTGATGCTGCACACCTTCACACAAGTATGGCCGTCTGTTACATGCAAATGGGACTAGGGGAGTACCCTCATGCCATCAACGAATGCAATATGGCGTTAGAAGTCTCGCCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCGGCCTTGAATCGGTTGGATTTGGCGATGAGGGATGTTAGGATTGTTTTGAATTGGGAGCCTAATAACCTTACAGCATTGGAGATCCAGGATAGTCTGAGAATTACAATGGAAGAAAAGGGTATCACTATAGATGAGACTGAGATTGCTTTGGCTACAATTGCAGAGCCTCCAGGTGCCCGGTTGCGAAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCATCACCAGAAAAGTGACGAGAAGATGGAGGAGGATAAGGAGGTTGTGCACAAGGAGGTGGTGCAAAAGGATCATGTGCAGGAGAATGTGAAGAGTCATGTTAAGGATAAGGATAAGGAAGTGGTCAAGAACACAATCGAGAAAGACAATTTGGAAGCAAGACCTGTTAAGCGGCGAGAAAAGCCGGTTACAAGGACAGTAAAGTTCATATTTGGAGAGGATATAAGATGGGCGCAGCTGCCGGTGAATTGTAGTTTGAGGATGATAAGGGATACAATAAAGGATCGGTTTCCACAATTGAAGGGTGTTCTTGTGAAGTATAAGGATCGAGAAGGTGATTTTGTTACAATAACCAATGTTGCTGATTTAAGGCTAGCTGAAAGTTCCGGTAATGTGCTGGGATCAATTCGACTTTATATTACAGAAGTGGATCCTTCACAGGAACCATCTTATGATGATAAAACCATGGTGAGTGGGGTGCCAACTTATGTTAGCAAATCAGGTGAGGATATAGAGAATGTAGCTAGGCAAAGAGCCGAACCGGTAGCAAACCGGGTGATTACTGTGGAGGACTGGCTTGTCCAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGACTCTGATGCATATCTAGATATTCACGAGGTTGGAATGAAGCTATATTCCGAAGCAATGGAGGATACTGCATCGGATGATGATGCTCAAGAACTGTTTGAAATTGCAGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTGTTTAATTGGGGGAATGTTCACATGTCTAGGGCGAGGAAGCGTGTATCCTCTGCAGAGGATGGATCAAGAGAGTCTTTGGAGAGTATCAAGTCTGCATATGACTGGGCTCAAAATGAGTACACAAAAGCAGAAACGAGATACGAAGAGGCCGTGAGAATCAAACCCGACTTCTATGAAGGACTTCTTGCACTCGGGTATCAGCAGTTTGAGCAAGCAAAGCTTCATTGGTGTTATTCGGTGGCAACCAATAAGGACCTGGACATTGGTGCTTCTGAAGAGGTTTTGCAGTACTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGTTGATGTGGGAAGAGATTGAGGAGCAGCGTTTGAATGGATTATCCAAATTCGACAAATATAAAGAACAGTTAGAGAAAATGGATTTGCATAATCTTTTCCGGGATGTTTCTCCGGAGGAAGCCGAAGAGCAGGCTTCAAAGATGAGGTTACAGGTATATCTTTTATGGGGAACGTTGTTGTATGAGCGCTCTGTTGTGGAATATAAGCTAGGCCTACCCACATGGGAGGAATGCTTGGAGGTTGCTGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCGACCGACATTGGTGTCATGATAAAGAATCACAGTTCTAATACAACAGCACTTGGAGGGTTCAAAATTGACGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAATTTGATGTTCCATCATTTCGACTTGAACCGTTGTTTCGTCGGCGTGTTCCAAAACTACATGACATCTTGGAGCAATTTTGA 2178 0.4421 MGKPTGKKKDHESPKAKDAKVPATTKTMDRSASKALDDDTAMFINMAQELKEEGNRLYQKKDHEAAMLKFEKALKLLPKNHIDAAHLHTSMAVCYMQMGLGEYPHAINECNMALEVSPRYSRALLKRAKCYAALNRLDLAMRDVRIVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATIAEPPGARLRKVVREKLKKKKGHHQKSDEKMEEDKEVVHKEVVQKDHVQENVKSHVKDKDKEVVKNTIEKDNLEARPVKRREKPVTRTVKFIFGEDIRWAQLPVNCSLRMIRDTIKDRFPQLKGVLVKYKDREGDFVTITNVADLRLAESSGNVLGSIRLYITEVDPSQEPSYDDKTMVSGVPTYVSKSGEDIENVARQRAEPVANRVITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTASDDDAQELFEIAADKFQEMAALALFNWGNVHMSRARKRVSSAEDGSRESLESIKSAYDWAQNEYTKAETRYEEAVRIKPDFYEGLLALGYQQFEQAKLHWCYSVATNKDLDIGASEEVLQYYNKAEDSMEKGMLMWEEIEEQRLNGLSKFDKYKEQLEKMDLHNLFRDVSPEEAEEQASKMRLQVYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHSSNTTALGGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHDILEQF* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3678 725 CDD PB1 272 347 - -
Amo16g3678 725 SUPERFAMILY CAD & PB1 domains 268 357 - -
Amo16g3678 725 Pfam PB1 domain 270 347 IPR000270 GO:0005515
Amo16g3678 725 SMART PB1_new 270 349 IPR000270 GO:0005515
Amo16g3678 725 PANTHER PROTEIN PHOX4 1 724 - -
Amo16g3678 725 MobiDBLite consensus disorder prediction 1 33 - -
Amo16g3678 725 PANTHER PROTEIN CLMP1 1 724 IPR044517 -
Amo16g3678 725 SUPERFAMILY TPR-like 46 534 IPR011990 GO:0005515
Amo16g3678 725 SMART tpr_5 121 154 IPR019734 GO:0005515
Amo16g3678 725 SMART tpr_5 85 120 IPR019734 GO:0005515
Amo16g3678 725 SMART tpr_5 47 80 IPR019734 GO:0005515
Amo16g3678 725 ProSiteProfiles PB1 domain profile. 270 349 IPR000270 GO:0005515
Amo16g3678 725 Gene3D - 270 345 - -
Amo16g3678 725 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g3678 725 Gene3D Tetratricopeptide repeat domain 44 173 IPR011990 GO:0005515
Amo16g3678 725 Gene3D Tetratricopeptide repeat domain 403 658 IPR011990 GO:0005515
Amo16g3678 725 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3678 Amo-Chr16 147719323 147723578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3678 37 170 Calmodulin-binding Proteins AT3G25230 29.371 1.63e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3678 - - vra:106765155 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3678 16 147719323 147723578 Amo08g2149 08 34342172 34346898 PCT
Amo08g2149 08 34342172 34346898 Amo16g3678 16 147719323 147723578 PCT