Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3645 ATGGTTTTCAGGTATGAGATCAAGACTCATGAAACTAAGTGTGAGATTGTGTTTGCTAGTATTCTAAGGGTAGGAAAGGTATTTCCAGGTCTACAAGGTTCTGAAATGAATTGGGTAGATAGGGATGGAAAGTTTCTTGTTTCCAACAATGGAGAATTCACCTTTGGGTTTGATCGAACCCAAAATGATACCACATTGTTTCTATTAGCAGTGGGTAATGCTTTTTTGGAGAAAGGGGGGAAAATTGTTTGGTCTAGTGACACAAGTGGGAAAGGGGTTTCTTCAATGGAATTGAAGGACACTGGGAATTTGGTTTTGATTGGGAGTAATGACAGTGAAGTGATTTGGCAGAGCTTCGATGATCCGACGGATACATTGCTTCCAATGCAGGAATTCCATAAGGGAATGAAACTTGTTAGTGAGCCTGATTCTAACAACTTTACCTATGTTCTTGAGATTGGATCGTCCGGTGATGTCACTCTTTCGGCCGTGTTACAAACTCTGCAACCAATGCCATATTGGTCTATGCAGAGTGATAGCCGCAGAATCGTCAATAGAGGTGGCAATGAGGTGGCTTCAGCAACCATTGTTGCGAATTCTTGGAGGTTCTATGACAAGAATAAGTCATTGTTGTGGGAATTTGTTTTCAAAGATAATGAGGCTGTGAATGATACTTGGACTGCAGTGTTGGGAAGTGATGGCATTATCACATTCTACAGTCTCCAAAATCAAGGATTGGATGGCGTCGCGCCAAGAAGAATTCCAGAATATTCTTGCAGCACACCGGAGCCTTGTGATCCCTACAATTTATGCACCGGTGACAGAAAGTGCAGCTGTCCTTCTGTTCTAAGCTCTAGGCCTAATTGCAAACCGGGTTTTGCCTCTCCTTGTAACTCGAAAGGTGCAATTGAGCTAGTTAAGGYGGACGATGGACTAAACTACTTTGCGCTCGGGTTCCTTCCACCCTTTTCGAGAACTGATCTGATTGGTTGCAAGACTTCCTGCAGTGAAAATTGTTCATGCCTTGCTATGTTCTTCCAAGAAAGTTCAAGAAGYTGTTTTCTATTGGATTGGATYGGAAGCTTTGAGAAGTCCGATAAGGATACTGGTTTTGTCTCTTACATTAAGGTCTCYAGKGATGGYGGCACTGACAAAGGTGATGGTGGAAATRGTAATAAGCAAACCGTGATTGTTGTGATAATTGTGRTTTTAACATTGCTTGTTATTTCTGGTATGATCTTTCTTGGCCTAAGATACTACAAGAAAAGTGAACATTCAGCCGAGACTCCCCAAGAGAATTCGGATGGTGACACTTTCTTGGAGAACTTAACTGGCATGCCAATTCGCTATGGCTACAACGATCTTGAAATCGCAACTAATAACTTCTCTGAGAAGCTTGGGCAAGGGGGTTTCGGCTCGGTTTACAAAGGAGTCCTACCAAATGGAACAGAACTAGCTGTGAAAAAGTTGGAAGGAATTGGCCAGGGGAAGAGAGAGTTCAGAGCTGAAGTTAGCATAATTGGTAGCATTCATCATCACCATCTGGTTCGGCTTAAAGGATTTTGCGCCGAAGGAACTCACCGGCTTCTTGCTTATGAGTACATGGCTAATGGCTCCTTGGATAAATGGATATTCAACAAAAACAAAGCAGAATTTTCATTGGATTGGGACACAAGGTTCAATATAGCGCTTGGAACTGCGAAAGGACTCGCATACCTTCACGAAGATTGCGACTCAAAGATTGTTCATTGTGATATCAAACCAGAAAATGTGCTTCTAGATGAGAACTTCAATGCCAAAGTTTCAGATTTTGGTCTAGCTAAGCTCATGACGCGCGAACAAAGCCATGTTTTCACAACACTAAGGGGGACTCGAGGGTATCTCGCCCCSGAGTGGATAACAAACTACGCCATATCAGAGAAGAGTGATGTATACAGCTATGGTATGGTTTTGTTAGAGATAATTGGCGGCCGGAAAAACTATGATCCGGWCGAAAGCTCGGAGAAATCCTATTTCCCATATTTTACATTCAAGATGATGGAAGAAGGGAAACTAAGAGACATTGTTGATTCAGAATTGAAAGCAKATGAAGATGATGAGAGGGTAGACATTGCAATCAAAGTTGCATTGTGGTGCATACAAGAAGACATGAATCTAAGGCCTTCAATGAGCAAAGTTGTGCAAATGCTTGAAGGTCTTTGCACTGTTCCTAAGCCACCATCAAGATTTTCTCCATTAGGATCTAATATTCACTCAATTCCTTTTTCTATGTCAACTAGTGAGGCTGGAACTTCTTCATCAGCACCATCAGATACTAATACTGAAGCTTTTCTCCGTGGGGTTCAACTTTCAGGACCAAGATAA 2364 0.4196 MVFRYEIKTHETKCEIVFASILRVGKVFPGLQGSEMNWVDRDGKFLVSNNGEFTFGFDRTQNDTTLFLLAVGNAFLEKGGKIVWSSDTSGKGVSSMELKDTGNLVLIGSNDSEVIWQSFDDPTDTLLPMQEFHKGMKLVSEPDSNNFTYVLEIGSSGDVTLSAVLQTLQPMPYWSMQSDSRRIVNRGGNEVASATIVANSWRFYDKNKSLLWEFVFKDNEAVNDTWTAVLGSDGIITFYSLQNQGLDGVAPRRIPEYSCSTPEPCDPYNLCTGDRKCSCPSVLSSRPNCKPGFASPCNSKGAIELVKXDDGLNYFALGFLPPFSRTDLIGCKTSCSENCSCLAMFFQESSRSCFLLDWIGSFEKSDKDTGFVSYIKVSXDGGTDKGDGGNXNKQTVIVVIIVXLTLLVISGMIFLGLRYYKKSEHSAETPQENSDGDTFLENLTGMPIRYGYNDLEIATNNFSEKLGQGGFGSVYKGVLPNGTELAVKKLEGIGQGKREFRAEVSIIGSIHHHHLVRLKGFCAEGTHRLLAYEYMANGSLDKWIFNKNKAEFSLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDENFNAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPXESSEKSYFPYFTFKMMEEGKLRDIVDSELKAXEDDERVDIAIKVALWCIQEDMNLRPSMSKVVQMLEGLCTVPKPPSRFSPLGSNIHSIPFSMSTSEAGTSSSAPSDTNTEAFLRGVQLSGPR* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3645 787 Gene3D - 41 124 - -
Amo16g3645 787 SUPERFAMILY Protein kinase-like (PK-like) 443 731 IPR011009 -
Amo16g3645 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 71 - -
Amo16g3645 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 72 787 - -
Amo16g3645 787 SMART serkin_6 460 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3645 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 140 IPR036426 -
Amo16g3645 787 Pfam Protein kinase domain 463 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3645 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Amo16g3645 787 CDD STKc_IRAK 466 733 - -
Amo16g3645 787 MobiDBLite consensus disorder prediction 755 787 - -
Amo16g3645 787 Gene3D Phosphorylase Kinase; domain 1 423 534 - -
Amo16g3645 787 Pfam D-mannose binding lectin 67 133 IPR001480 -
Amo16g3645 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 14 71 - -
Amo16g3645 787 ProSiteProfiles Protein kinase domain profile. 460 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3645 787 MobiDBLite consensus disorder prediction 755 779 - -
Amo16g3645 787 PIRSF SRK 12 88 IPR024171 GO:0004674
Amo16g3645 787 PIRSF SRK 65 779 IPR024171 GO:0004674
Amo16g3645 787 SMART blect_4 37 122 IPR001480 -
Amo16g3645 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 72 787 - -
Amo16g3645 787 ProSitePatterns Protein kinases ATP-binding region signature. 466 489 IPR017441 GO:0005524
Amo16g3645 787 Gene3D Transferase(Phosphotransferase) domain 1 535 738 - -
Amo16g3645 787 ProSiteProfiles Bulb-type lectin domain profile. 1 119 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3645 Amo-Chr16 147206126 147208955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3645 407 740 Receptor kinase-like Gene Family AT5G20050 45.070 2.05e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo16g3645 Pkinase 4.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3645 - - adu:107495387 1518.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3645 16 147206126 147208955 Amo06g2849 06 93871529 93874390 hybridization
Amo16g3645 16 147206126 147208955 Amo08g2106 08 33903116 33906840 PCT
Amo08g2106 08 33903116 33906840 Amo16g3645 16 147206126 147208955 PCT