Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3635 ATGGACCCCAAATCTTGCGGCGTTATGTCAGCACCGTCGTTATTAGCCGGCGACTACTGTGACTTCCGCCGTGCTCCGACGGAGCTCGATCTGGAAGTCGAAGAATTCATGAAGACTTGGATGGCGGACGCACCGAACGAGGAACACGCCGACGACAACGACTTGAAACCTTGTATGACGGATCCGTTCATCGGCAGCGGCGGCGGTGACGGTGGCGTTCCCTCCGCCTCCGCCTCCGCCGCTTTCCGAAACCCGGATGTGGTGGTGACTACATTTTCGACCTGTACTAGTGGAGTGACAGATAATAATAACAATATTAATTATAATAACAGTACTCAACAGCAGCAGCAGCTTGTGTGCTCTCAGAACCTCACTCGCAACCATTCAACTATTGATTCTCAATCATCCATTTGTGGTACAGCTACTGTTGGAAGCCCAGTGTCTGCTAATAAACCAAACGGCGGCAGAGGAAGTGAAGGCAAAGGAGGGACCACGTGCGGTTCCTCATCACGTGAGGCGTCCGATGAGGATGATGAGGCAGGTCCATGTGAAGAAAGCACAAACCCTATTGATATGAAGCGCCTCAGAAGGAAGGTTTCTAATCGCGAGTCTGCTCGGAGGTCTAGAAGAAGGAAGCAAGCTTATTTGACTGACCTTGAGTCTCAGGTTGAACAGCTGAGGTTGGAAAATGCAACCCTGTACAAACAGCTTACAGATGCTAGCCAACACTTTCGTGATGCTGATACAAATAACCGAGTTCTTAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAATTAGCGGAGGACATGGTTGCTCGAAGCTCTTTCACTAATCTGAACAACCAGCTAATCCAGAATCAGCGGGGTCAGATGAACACCAACAATAATTTGCGGCGCGTGGCACATGTTTCGCCAACCATTACTGTCCATGGAAATGACTCCTCATATGGAAGCTGCATCACTAGTGTTGATGGACAAAACTCAGCCCATCTTGGAGGACTTGCCAGAAACTTGGACATAACTAATAATAATAATAATAATAACAACTATAGTGATTATAATGCAGTCATAAGCGATGCTGTAAGCTCTGTCACTAACTTATGGCCGTGA 1113 0.4771 MDPKSCGVMSAPSLLAGDYCDFRRAPTELDLEVEEFMKTWMADAPNEEHADDNDLKPCMTDPFIGSGGGDGGVPSASASAAFRNPDVVVTTFSTCTSGVTDNNNNINYNNSTQQQQQLVCSQNLTRNHSTIDSQSSICGTATVGSPVSANKPNGGRGSEGKGGTTCGSSSREASDEDDEAGPCEESTNPIDMKRLRRKVSNRESARRSRRRKQAYLTDLESQVEQLRLENATLYKQLTDASQHFRDADTNNRVLKSDVEALRAKVKLAEDMVARSSFTNLNNQLIQNQRGQMNTNNNLRRVAHVSPTITVHGNDSSYGSCITSVDGQNSAHLGGLARNLDITNNNNNNNNYSDYNAVISDAVSSVTNLWP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3635 370 CDD bZIP_plant_GBF1 194 245 IPR045314 GO:0003700|GO:0006355
Amo16g3635 370 Gene3D - 192 247 - -
Amo16g3635 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 254 IPR004827 GO:0003700|GO:0006355
Amo16g3635 370 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Amo16g3635 370 SMART brlzneu 189 253 IPR004827 GO:0003700|GO:0006355
Amo16g3635 370 PANTHER BASIC LEUCINE ZIPPER 63 30 370 - -
Amo16g3635 370 Coils Coil 209 236 - -
Amo16g3635 370 Coils Coil 251 271 - -
Amo16g3635 370 Pfam bZIP transcription factor 192 239 IPR004827 GO:0003700|GO:0006355
Amo16g3635 370 MobiDBLite consensus disorder prediction 143 213 - -
Amo16g3635 370 SUPERFAMILY Leucine zipper domain 193 242 IPR046347 GO:0003700|GO:0006355
Amo16g3635 370 PANTHER BASIC LEUCINE ZIPPER 9 30 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3635 Amo-Chr16 147075418 147081905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3635 106 370 bZIP Transcription Factor Family AT5G24800 46.125 1.61e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo16g3635 bZIP_1 6.6e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3635 K25784 - gmx:778193 293.508