Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3606 ATGGAAACACCAAGTTTTTTTCAAAACAGCTTCTGCTCTCAATTCACCTCTGATGATGGCGACAACAACAATAACAATAACAACACCGCTGTAAGCACAGGAGACAATTTCATCGTGGAAGATCTCCTTGACTTTTCGAACGATGACGGTATCATTGCCAACAATAACGGTGTTGTTGCCACCTTGGACTCTGTCACAGGAAACTCTGGTTCAGCCAATTCCTCTAATACTACCGTTGTTGAAAGCTGCAATTCCTCCTCCTTCTCTTTCTCTGGTTGCGAACCCAGTATCATTGCGGATATTGGTAGTCGGAGTCTTGTGGATGGTCATTTCTCTGGTGAACTTTGTGTTCCGCAGTATGACGACCTGGCAGAGTTAGAATGGCTTTCCAATTTTGTGGAGGAATCCTTCTCCAGTGAGGATCTACAAAAGATGCAACTCATCTCAGGAATGAAGAGACCAAACGATGATGCTTCATCGGAGGCCCACAAGTTCCGCGCAGAGCCCAACAGAAAAAGCCCAATATTCAACTCAGAAGTGTCAGTGCCAGCCAAGGCCCGTAGCAAGCGGTCTCGTGTGCCTCCATGCAATTGGACTTCGCGCCTACTGGTACTCTCTCCAACTCCGACTCCCACAACGTCATCATCATCAGAACCTGATGTGATGGTCCCTATTTCTACTCCAACTCCAGTGTCCTTCACTATTCCGGTCACCGGAAAAAAGCCGGGGAAGACAACAGGCAGAAAAAAAGAAGGTGGGGATTGTGGTTCTGGTGATGGTCGCAAGTGCTTGCATTGTGCTACGGACAAGACACCGCAGTGGCGGACTGGGCCCATGGGCCCTAAGACGTTGTGCAATGCTTGTGGTGTGAGGTACAAGTCAGGCCGTCTTGTGCCAGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTGTTAACTAAGCACTCTAACTCACATCGAAAGGTTTTGGAGCTTCGTAGACAAAAGGAGATGATGAGAGCACAACAACACCATCATCAACACCAACAACAGTTCATACAACATCATCATCATCACCAGAACATGATGTTTGATGTACCCACAAACGCTGATGATTACTTGATCCACCAACATGTTGGGCCCGATTTCAGGCAGTTGATTTAG 1140 0.4781 METPSFFQNSFCSQFTSDDGDNNNNNNNTAVSTGDNFIVEDLLDFSNDDGIIANNNGVVATLDSVTGNSGSANSSNTTVVESCNSSSFSFSGCEPSIIADIGSRSLVDGHFSGELCVPQYDDLAELEWLSNFVEESFSSEDLQKMQLISGMKRPNDDASSEAHKFRAEPNRKSPIFNSEVSVPAKARSKRSRVPPCNWTSRLLVLSPTPTPTTSSSSEPDVMVPISTPTPVSFTIPVTGKKPGKTTGRKKEGGDCGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQHHHQHQQQFIQHHHHHQNMMFDVPTNADDYLIHQHVGPDFRQLI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3606 379 PANTHER GATA TRANSCRIPTION FACTOR 1 379 - -
Amo16g3606 379 CDD ZnF_GATA 262 309 IPR000679 GO:0006355|GO:0043565
Amo16g3606 379 Pfam GATA zinc finger 263 296 IPR000679 GO:0006355|GO:0043565
Amo16g3606 379 SMART GATA_3 257 307 IPR000679 GO:0006355|GO:0043565
Amo16g3606 379 MobiDBLite consensus disorder prediction 207 234 - -
Amo16g3606 379 MobiDBLite consensus disorder prediction 207 257 - -
Amo16g3606 379 Gene3D - 256 307 IPR013088 GO:0006355|GO:0008270
Amo16g3606 379 ProSiteProfiles GATA-type zinc finger domain profile. 257 293 IPR000679 GO:0006355|GO:0043565
Amo16g3606 379 ProSitePatterns GATA-type zinc finger domain. 263 288 IPR000679 GO:0006355|GO:0043565
Amo16g3606 379 PANTHER GATA TRANSCRIPTION FACTOR 1 379 - -
Amo16g3606 379 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 259 321 - -
Amo16g3606 379 PIRSF Txn_fac_GATA_plant 20 353 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3606 Amo-Chr16 146542775 146545475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3606 36 379 C2C2-Gata Transcription Factor Family AT5G25830 51.821 1.74e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo16g3606 GATA 3.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3606 - - zju:107420464 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3606 16 146542775 146545475 Amo16g3606 16 146542775 146545475 ECH