Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3552 ATGTCACTCAAGCGAAGAAGAACCCACGCTCCCAAGCCCGCCCTCGACGACGACGTCATCTGCGAGCGTTGCTCCTCCGGCGACTCCCCGGCGGAGCTTCTCCTCTGCGACAAATGCGATCGAGGCTACCACCTCTTCTGTCTCCGACCTATCCTTCCTTCCGTTCCCAAAGGCTCATGGCTCTGCCCCTCTTGTTCCCACAGTGACACCAAGAAACCAAAATCATTTCCACTTGTTCAGACCAAAATCATTGACTTCTTTAGAATTAAACGGTCTTCGGAGGAAACCTTAACTTCAATTCAAGATGTTCGGAAGAAGCGGAAGCGGGGAAGCAGCGTGGCTTTGTTGAAGAAGAAGAAGAGGAAGCTTCTTCCGTTCGTTCCGACCGAGGATCCTAAGAGAAGGTTGGAGCAGATGGCATCGCTGGCTACAGCACTGATGGCGACAAAAGCGGTGTTCAGCAATGAGCTTACTTACATTCCTGGTATGGCGCCAAGATCTGCTAATTGTCCTGCTTTGGAGAGTGGTGGGATGCAGGTCTTATCAAAAGAAGACACAGAAACTTTAAACTTGTGCAGAACTATGATGAAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTTGAGGCAGATAGATTCATAAGAGATTTAACCATAATCACAGAATATGTTGGAGACGTGGACTTTTTAAAGAATAGGGAAAATGATGATGGGGATAGCATGATGACACTTCTTTCTGCTTCTAATCCCTCCCAAACGCTTGTCATCTGTCCAGATAAACGAAGCAATATAGCACGCTTCATCAATGGCATAAACAACCACACACCGGAAGGAAAAAAGAAGCAGAACCTGAAGTGTGTGAGATTTGACGTCAATGGTGAATGCCGGGTTCTTTTAATTGCTAACAGAGATATATCAAAAGGGGAGAGACTGTACTATGACTACAATGGATATGAACATGAATATCCAACTGAACATTTTGTCTAA 1011 0.4599 MSLKRRRTHAPKPALDDDVICERCSSGDSPAELLLCDKCDRGYHLFCLRPILPSVPKGSWLCPSCSHSDTKKPKSFPLVQTKIIDFFRIKRSSEETLTSIQDVRKKRKRGSSVALLKKKKRKLLPFVPTEDPKRRLEQMASLATALMATKAVFSNELTYIPGMAPRSANCPALESGGMQVLSKEDTETLNLCRTMMKRGECPPLMVVFDPLEGFTVEADRFIRDLTIITEYVGDVDFLKNRENDDGDSMMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3552 336 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 6 333 - -
Amo16g3552 336 Pfam PHD-finger 20 67 IPR019787 -
Amo16g3552 336 PANTHER HISTONE ACETYLTRANSFERASE 6 333 - -
Amo16g3552 336 ProSiteProfiles SET domain profile. 202 324 IPR001214 GO:0005515
Amo16g3552 336 SUPERFAMILY FYVE/PHD zinc finger 12 73 IPR011011 -
Amo16g3552 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 84 IPR013083 -
Amo16g3552 336 CDD PHD_RSF1 21 65 - -
Amo16g3552 336 SMART PHD_3 20 66 IPR001965 -
Amo16g3552 336 CDD SET_ATXR5_6-like 199 336 - -
Amo16g3552 336 SUPERFAMILY SET domain 194 324 IPR046341 -
Amo16g3552 336 Pfam SET domain 42 324 IPR001214 GO:0005515
Amo16g3552 336 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Amo16g3552 336 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Amo16g3552 336 Gene3D SET domain 106 336 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3552 Amo-Chr16 145573863 145578256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3552 10 84 C2H2 Transcription Factor Family AT3G01460 31.579 1.89e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo16g3552 SET 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3552 K24406 - gmx:100775247 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3552 16 145573863 145578256 Amo16g3552 16 145573863 145578256 ECH