Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3530 ATGGAGTGCAATAAAGATGAGGCAGTTAGGGCCAAAGAAGTGGCAGAGAGGAAATTATCTGAAAAGGACTACGTTGGTGCAAAAAGGTTTGCTCTCAAGGCTCTTAATTTGTATCCTGCACTGGAGGGTCTTACCCAGTTTGTGACAACCTTGGATGTTTATATCTCCGCCGAGAAAAAAATAAGTGGAGTAACAGATTGGTATGGTGTACTTGGAGTGACTCCTTCTGCTGATGATGAGACAGTTAAAAAGCAGTACAGAAAGCTGATTCTCGCTCTTCATCCTGACAAAAACAAGTCTCCGGGTGCGGACGGTGCGTTTAAGCTTGTTTCTGAGGCATGGACTTTGCTATCAGATAAGGCGAGAAGACTAGCATATAATCAGAAGAGGAGTTCAACAGGGTTTCAGCATAATGCTCCCAACCACGTTGTGTCGCAACCAAAAGCACCCAATCCAAATAGGATGGCAACTCCAAATGCAAGAACTGGAAGTAATAATGCTCAGGCTCCTCCAACATCCGTTCCTCCTCCATATAGAATGGTTGATACCTTTTGGACTATCTGTACTCGTTGTAGTGCACGACTTCAATATCTCAGGATTTATTTGAATGTTGCGCTACGATGTCCAAACTGTAATCAGGCGTTTGTGGCTGTAGAGAAGGTTCCACCTGCTGATGGTGTTAAGTCTTTTAATTGTTCCGCTCAGCAACATCAACAAAATTCTCAGCCTCGTGCTGGTGGTTGGGATCACCCCACTACTAATCCAGGAAGAACTCATTCAGTTTCTCAAAACATAGAATCAAGCAGTGTGCGAGGCAGGTCTTCTTTTAGTAACACAAACTCCCAGTACGCTCCTCACTCAAGAATGCATGGTTTTGCTAGCAAAGATAGTTCAGCATCTACTCCAGCTGCATCTACTAAGCAGCAGGCAACTGTGAAATCAAGAAGCACATGTGAGGGTGCTCCTTCAATTGCTGCAAGGGAGAGCAGTCACATGTACAAGAGGTCTGATGGTTCTTTCTATAATGTCCAAAGAACTGTAAAGAAAATGAGATCAGATGACATTCACATGGGTATAGAAACGACACATGGTTTTTCACGTTTTACTAACAAGCATCGCGGCATGAGAGAGTTGTCAACGTATGAATTGCGAAACATGTTGAGCAATAAAGCACAGAATGAGATTCGCAAGAAACTCCAAGAATGGAAATCAACAGCTGAAGATAAGGTTACAAACAAGGACAAAGGAACCGAGACACAAAAAGGCACGTTAAAGGACAAAACTTGTTCAGAGAAGCAGGAAGATAAGGTTATGAACAAGGACAAAGGAAATGTGAGACAAAAAGGCTTGTTAAATGACAAAACAACTGGTTCGGAGAAGCATGAAGATTCCACCATTAATGGTAATGGACATCTGGAAAGGGATCCTGTTCCCGTCACATCTGATGATATTGGAAAGGAGAACCAAGACTATGTGATTCCCGTTACTGATTCTGATTTTCACAATTTTGACTTGGAAAGAGCTGAAAATTCCTTTGCAGAGGACCAGGTCTGGGCAGCTTACGATGATGATGATGGAATGCCTAGATTTTATGCTAAAGTTCAAAAGGTGATGTCAACGAAGCCATTTAAAATGAGTGTCAGTTGGCTTAACTCTCGAAGCAACAAGGAGTTGGGCCCGATGGATTGGATAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCACGATCGGCAAACGTGAAATAACTGGATCGTTAAATTCCTTTTCCCATAAGGTTAGATGGGCAAAAGGCAACAGAGGAATTGTTCGCATCTTTCCGAGGAAGGGGGATATCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATAAAGATACTCCTGATGAAGTGAAGCACAAGTATGATATGGTGGAAGTACTTGATGATTTCAATGACAAGCAAGGTGTACTTGTTACACCACTTATCAAGGTTGATGGTTTTGTGGCAGTGTTTCAGAGGATTGAAGGTCATGATCTGGTAAGGAAGATTCCCAAAGTGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACAGGACAAGAAGCTCCTAATGCTCCAAGGGGTTGTCAAGAGTTGGATCCAGCAGCCACCTCTTTAGACCTCCTTCAGACAAAGAATGAAGCCAATGAGGCATTGGACAATGTTGAAAAATCAAAGGAAGACACAATTGCGATGATGATACAGAATTTGTTTTCTGCCTTGCAAAGCAAATGCCTTCTCAATAGGTTCTAG 2283 0.424 MECNKDEAVRAKEVAERKLSEKDYVGAKRFALKALNLYPALEGLTQFVTTLDVYISAEKKISGVTDWYGVLGVTPSADDETVKKQYRKLILALHPDKNKSPGADGAFKLVSEAWTLLSDKARRLAYNQKRSSTGFQHNAPNHVVSQPKAPNPNRMATPNARTGSNNAQAPPTSVPPPYRMVDTFWTICTRCSARLQYLRIYLNVALRCPNCNQAFVAVEKVPPADGVKSFNCSAQQHQQNSQPRAGGWDHPTTNPGRTHSVSQNIESSSVRGRSSFSNTNSQYAPHSRMHGFASKDSSASTPAASTKQQATVKSRSTCEGAPSIAARESSHMYKRSDGSFYNVQRTVKKMRSDDIHMGIETTHGFSRFTNKHRGMRELSTYELRNMLSNKAQNEIRKKLQEWKSTAEDKVTNKDKGTETQKGTLKDKTCSEKQEDKVMNKDKGNVRQKGLLNDKTTGSEKHEDSTINGNGHLERDPVPVTSDDIGKENQDYVIPVTDSDFHNFDLERAENSFAEDQVWAAYDDDDGMPRFYAKVQKVMSTKPFKMSVSWLNSRSNKELGPMDWIGSGFYKTCGDFTIGKREITGSLNSFSHKVRWAKGNRGIVRIFPRKGDIWALYRNWSPDWNKDTPDEVKHKYDMVEVLDDFNDKQGVLVTPLIKVDGFVAVFQRIEGHDLVRKIPKVEMFRFSHQVPNYLLTGQEAPNAPRGCQELDPAATSLDLLQTKNEANEALDNVEKSKEDTIAMMIQNLFSALQSKCLLNRF* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3530 760 MobiDBLite consensus disorder prediction 406 469 - -
Amo16g3530 760 Pfam DnaJ domain 66 127 IPR001623 -
Amo16g3530 760 MobiDBLite consensus disorder prediction 229 321 - -
Amo16g3530 760 Pfam Domain of unknown function (DUF3444) 493 698 IPR024593 -
Amo16g3530 760 PRINTS DnaJ domain signature 68 86 IPR001623 -
Amo16g3530 760 PRINTS DnaJ domain signature 102 122 IPR001623 -
Amo16g3530 760 PRINTS DnaJ domain signature 86 101 IPR001623 -
Amo16g3530 760 MobiDBLite consensus disorder prediction 131 169 - -
Amo16g3530 760 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Amo16g3530 760 Coils Coil 718 742 - -
Amo16g3530 760 MobiDBLite consensus disorder prediction 131 174 - -
Amo16g3530 760 MobiDBLite consensus disorder prediction 229 318 - -
Amo16g3530 760 SMART dnaj_3 65 122 IPR001623 -
Amo16g3530 760 MobiDBLite consensus disorder prediction 406 485 - -
Amo16g3530 760 Gene3D DnaJ domain 55 148 IPR036869 -
Amo16g3530 760 PANTHER BNAC03G44070D PROTEIN 1 740 - -
Amo16g3530 760 CDD DnaJ 66 119 IPR001623 -
Amo16g3530 760 SUPERFAMILY Chaperone J-domain 65 126 IPR036869 -
Amo16g3530 760 PANTHER HEAT SHOCK PROTEIN-LIKE 1 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3530 Amo-Chr16 145170697 145173409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3530 4 223 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.140 2.82e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3530 - - aip:107647573 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3530 16 145170697 145173409 Amo16g3530 16 145170697 145173409 ECH