Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3528 ATGAGAACTCAGCAAGACAAGTTTGTTAGGTTTCAGGACTGGAATTCAGACAAGGGTTCTGAGAGCAATTATCCTGTGATCAACATTGCACCTTCACAGAGATTCAAAACTACATTAAATTCTATATCTGCAAAGTTTCAAAGGGGATTGGAATATGGTTTTCAAAGGATAAAGAGATTCAGTTCATCATTCAAGTCCTTTCTGTTCAGCCGTGCTTTTTCTAGTAACTATAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCGTTCCTTCAAAAATGGAACAAGATATTTGTGTTGCTATGTGTTATTGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCTGTGATCGATGATGAGAAGAAATGTCTTTCACTGGACAACAAGATGGAGATTACAGCAACTGTTTTAAGAACTTTCTCTGATATCTTTTATATAGTCCACATGATTTTCCAGTTTCGTACTGGATTCATTGCTCCATCTTCTCGAGTGTTTGGAAGAGGTGTTTTGGTTGAGGATTCTTGGGCAATAGCAAAGCGATATCTAACATCTTATTTCTTAGTTGACATTCTTTCTGTTCTTCCCCTTCCACAGGTGGTGATTCTAATAGTCATTCCAGGGATGAGTGGCTACAAATCGCTGAATACAAAGAACTTGCTGAAATTTATTGTTTTCTTCCAATATATACCTCGAGTTTTTCGAATAATTCCATTATATAAAGAAGTTACAAGAACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGTGCTGTATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGGGAAACCACATGCTGGCAAAAAGCCTGCAACCGAAGTAATGCAACATGTAATAAGGAGGACATGTATTGCAACAATCATCAAGGAGGGTTAAGCACAATTTCAACGTTTCTCAATGCTTCTTGCCCAATAAAGGAGACAAACACGACACTTTTTGATTTTGGGATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGACTTTCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAAAAGTTTGAGTTCTCTTGGTCAAAACCTGACGACAAGTACCTTTGTGTGGGAAATCTGCTTTGCAGTTTTCATTTCCATCGCTGGGTTGGTATTATTTTCATTCCTTATCGGGAATATGCAGACATATTTGCAATCAACAACAACAAGATTAGAGGAGATGAGGGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGACTCCTCCCTGACAGCCTTAGGCAGCGAATCAGACGATATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAGGATAACTTGATTTGCAATCTTCCAAAGGATTTGAGAAGGGACATTAAGCGCCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTTTGGATGCCATGTGTGATCGTCTTAAGCCAGTGCTCTACACGGAAGAAAGCTATATTGTCCGGGAAGGAGACCCTGTCGATGAGATGCTTTTCATAATGCGAGGCAGGTTATTGACAATGACAACCAACGGAGGAAGAACAGGCTTCTTTAATTCCGAGTATCTTAAAGCTGGTGACTTTTGCGGAGAAGAGCTTCTCACATGGGCTTTAGATCCTCATTCTTCATCCAACCTCCCCATCTCAACCAGGACTGTCCAAACACTTTCAGAAGTGGAAGCTTTCGCACTAAAAGCGGATGACTTGAAGTTTGTGGCTTCTCAATTTAGGCGTCTTCACAGCAAGCAGCTACGCCACACTTTCCGGTTCTACTCGCAACAGTGGCGAACATGGGCCGCATGTTTCATTCAAGCGGCCTGGCGTCGCTATGCTAAAAAGAAGCTTGAAGAGTCTCTCGTTGAAGAAGAGAATAGGCTGAAAGATGCATTGGCAAAGGTAGGTGGTAGCTCACCAAGTCTAGGTGCCACCATATATGCCTCCAGGTTTGCTGCCAATGCACTTAGATTGTTGCGCCGTAACCGCACAAGGAAGACAAGGATGCCGGAGAGAATACCCCCCATGCTGCTTCAGAAGCCTGCGGAACCTGATTTTACTGATGAAGAGCAGTAA 2154 0.4188 MRTQQDKFVRFQDWNSDKGSESNYPVINIAPSQRFKTTLNSISAKFQRGLEYGFQRIKRFSSSFKSFLFSRAFSSNYSSRKKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDNKMEITATVLRTFSDIFYIVHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLTSYFLVDILSVLPLPQVVILIVIPGMSGYKSLNTKNLLKFIVFFQYIPRVFRIIPLYKEVTRTSGILTETAWAGAVFNLFLYMLASHVVGAFWYLFSIERETTCWQKACNRSNATCNKEDMYCNNHQGGLSTISTFLNASCPIKETNTTLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKSLSSLGQNLTTSTFVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRQRIRRYEQYKWQETRGVDEDNLICNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGRLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYAKKKLEESLVEEENRLKDALAKVGGSSPSLGATIYASRFAANALRLLRRNRTRKTRMPERIPPMLLQKPAEPDFTDEEQ* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3528 717 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Amo16g3528 717 Coils Coil 640 660 - -
Amo16g3528 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 715 - -
Amo16g3528 717 Pfam Ion transport protein 94 415 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo16g3528 717 CDD CAP_ED 488 619 IPR000595 -
Amo16g3528 717 Pfam Cyclic nucleotide-binding domain 508 599 IPR000595 -
Amo16g3528 717 SUPERFAMILY cAMP-binding domain-like 417 610 IPR018490 -
Amo16g3528 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 715 - -
Amo16g3528 717 Gene3D - 92 412 - -
Amo16g3528 717 SUPERFAMILY Voltage-gated potassium channels 85 410 - -
Amo16g3528 717 Gene3D Helix hairpin bin 414 479 - -
Amo16g3528 717 Gene3D Jelly Rolls 486 606 IPR014710 -
Amo16g3528 717 SMART cnmp_10 488 619 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3528 Amo-Chr16 145111644 145117418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3528 1 716 Ion Channels AT5G53130 79.138 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3528 K05391 - gmx:100801032 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3528 16 145111644 145117418 Amo16g3528 16 145111644 145117418 ECH