Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3524 ATGGCATCGAGTTCAATGTCGTCTTCAGGGTCATGGAGTGCCAAGGACAATAAGGCCTTTGAAAGGGCATTGGCGGTTTATGATAAGGACACCCCTGACCGTTGGTACAATGTTGCTCGCGCCGTTGGCGGAAAAACTCCCGACGAAGTTAAGCGCCACTACGCACTTCTCCTCGGAGATGTTGGCTACATAGAATCAGGGCAAGTGCCATTTCCAAAGTACAAGAAAAATGGAGCCTCTAATTAG 246 0.4919 MASSSMSSSGSWSAKDNKAFERALAVYDKDTPDRWYNVARAVGGKTPDEVKRHYALLLGDVGYIESGQVPFPKYKKNGASN* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3524 81 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 79 - -
Amo16g3524 81 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
Amo16g3524 81 SUPERFAMILY Homeodomain-like 4 58 IPR009057 -
Amo16g3524 81 CDD SANT 18 58 IPR001005 -
Amo16g3524 81 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Amo16g3524 81 SMART sant 8 60 IPR001005 -
Amo16g3524 81 Gene3D - 2 71 - -
Amo16g3524 81 ProSiteProfiles SANT domain profile. 7 54 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3524 Amo-Chr16 145037829 145039098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo16g3524 Myb_DNA-binding 2.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3524 - - ahf:112719426 137.502