Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3496 ATGGAAACAGAGAAGCTTCCAGCAATGGATAATAACACCTTACTATCTGAAACTTTCTTGAACACAAGAGAGTTTGGTGGAGAGGATCTGTTTTCCATTTTAGAGAGCCTTGAAGACTTCAATAGTCCTCCTCCTCCTCCTCCAAGGAAGAGACAGAAGGTTACTGCATCAGCATCCGAAGATGGACAAGAAAGGGTATTATCGTCACATATAACTGTTGAGCGCAACCGGAGAAAGCAAATGAATCACCATTTGTCTGTCTTGAGGTCACTTATGCCCTCTTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAACGAATTACAGCAAGTTCTACAATGCCTAGAGGCCAAGAAACACAGAAAGGTATTTTACACAGATAACGTACTAAGCCCAAGACTAATTATTCCAAGCCCAAAATTAAGCCCAAGAAAACCGCCACTAAGCCCAAGAATACTAACCCTCCCGCCCATTAGTCCAAGAACTCCACAACCTGGAAGCCCATGGTTGCACTCCATCGAGCCTTCTCCTTCTTCTTCTGGATCATCCGCTATGAATGATAATATGAATGAGCTTGTTGCGAATTCAAAGTCGGTGATTGCTGACGTGGAGGTTAAGTTTTGCGGTCCGCATGTATTAGTGAAAACTGTGTCTCCAAGAATTCCTGGGCAAGCCATGAGGATAGTATCAGCGCTTCAAGACCTTGCTCTTGAGATTCTTCATCTCACCATTACCACTTCTGATGAAACCATGCTATACTCTTTCACTATTAAGATTGGGATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACATATCCAGCAAACATTCTGCTAA 864 0.4271 METEKLPAMDNNTLLSETFLNTREFGGEDLFSILESLEDFNSPPPPPPRKRQKVTASASEDGQERVLSSHITVERNRRKQMNHHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQCLEAKKHRKVFYTDNVLSPRLIIPSPKLSPRKPPLSPRILTLPPISPRTPQPGSPWLHSIEPSPSSSGSSAMNDNMNELVANSKSVIADVEVKFCGPHVLVKTVSPRIPGQAMRIVSALQDLALEILHLTITTSDETMLYSFTIKIGIECQLSAEELAQHIQQTFC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3496 287 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Amo16g3496 287 Gene3D - 57 130 IPR036638 GO:0046983
Amo16g3496 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Amo16g3496 287 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 49 287 - -
Amo16g3496 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 131 IPR036638 GO:0046983
Amo16g3496 287 MobiDBLite consensus disorder prediction 38 66 - -
Amo16g3496 287 MobiDBLite consensus disorder prediction 154 195 - -
Amo16g3496 287 MobiDBLite consensus disorder prediction 173 195 - -
Amo16g3496 287 PANTHER TRANSCRIPTION FACTOR FAMA 49 287 IPR044283 GO:0003700|GO:0010052
Amo16g3496 287 SMART finulus 71 122 IPR011598 GO:0046983
Amo16g3496 287 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3496 Amo-Chr16 144444423 144447760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3496 19 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 46.407 1.66e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g3496 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3496 K20558 - gmx:100809717 322.013