Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3484 ATGGAGTGCAATAAAGATGAGGCAGTTAGGGCCAAAGAAGTGGCAGAGAGGAAATTATCTGAAAAGGACTACGTTGGTGCAAAAAGGTTTGCTCTCAAGGCTCTTAATTTGTATCCTGCACTGGAGGGTCTTACCCAGTTTGTGACAACCTTGGATGTTTATATCTCCGCCGAGAAAAAAATAAGTGGAGTAACAGATTGGTATGGTGTACTTGGAGTGACTCCTTCTGCTGATGATGAGACAGTTAAAAAGCAGTACAGAAAGCTGATTCTCGCTCTTCATCCTGACAAAAACAAGTCTCCGGGTGCGGACGGTGCGTTTAAGCTTGTTTCTGAGGCATGGACTTTGCTATCAGATAAGGCGAGAAGACTAGCATATAATCAGAAGAGGAGTTCAACAGGGTTTCAGCATAATGCTCCCAACCACGTTGTGTCGCAACCAAAAGCACCCAATCCAAATAGGATGGCAACTCCAAATGCAAGAACTGGAAGTAATAATGCTCAGGCTCCTCCAACATCCGTTCCTCCTCCATATAGAATGGTTGATACCTTTTGGACTATCTGTACTCGTTGTAGTGCACGACTTCAATATCTCAGGATTTATTTGAATGTTGCGCTACGATGTCCAAACTGTAATCAGGCGTTTGTGGCTGTAGAGAAGGTTCCACCTGCTGATGGTGTTAAGTCTTTTAATTGTTCCGCTCAGCAACATCAACAAAATTCTCAGCCTCGTGCTGGTGGTTGGGATCACCCCACTACTAATCCAGGAAGAACTCATTCAGTTTCTCAAAACATAGAATCAAGCAGTGTGCGAGGCAGGTCTTCTTTTAGTAACACAAACTCCCAGTACGCTCCTCACTCAAGAATGCATGGTTTTGCTAGCAAAGATAGTTCAGCATCTACTCCAGCTGCATCTACTAAGCAGCAGGCAACTGTGAAATCAAGAAGCACATGTGAGGGTGCTCCTTCAATTGCTGCAAGGGAGAGCAGTCACATGTACAAGAGGTCTGATGGTTCTTTCTATAATGTCCAAAGAACTGTAAAGAAAATGAGATCAGATGACATTCACATGGGTATAGAAACGACACATGGTTTTTCACGTTTTACTAACAAGCATCGCGGCATGAGAGAGTTGTCAACGTATGAATTGCGAAACATGTTGAGCAATAAAGCACAGAATGAGATTCGCAAGAAACTCCAAGAATGGAAATCAACAGCTGAAGATAAGGTTACAAACAAGGACAAAGGAACCGAGACACAAAAAGGCACGTTAAAGGACAAAACTTGTTCAGAGAAGCAGGAAGATAAGGTTATGAACAAGGACAAAGGAAATGTGAGACAAAAAGGCTTGTTAAATGACAAAACAACTGGTTCGGAGAAGCATGAAGATTCCACCATTAATGGTAATGGACATCTGGAAAGGGATCCTGTTCCCGTCACATCTGATGATATTGGAAAGGAGAACCAAGACTATGTGATTCCCGTTGCTGATTCTGATTTTCACAATTTTGACTTGGAAAGAGCTGAAAATTCCTTTGCAGAGGACCAGGTCTGGGCAGCTTACGATGATGATGATAAAATGCCTAGATTTTATGTTAAAGTTCAAAAGGTGATGTCAACGAAGCCATTTAAAATGAGTGTCAGTTGGCTTAACTCTCGAAGCAACAAAGAATTGGGGCCGATGGATTGGATAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCACGATCGGCAAACGTGAAATAACTGGATCGTTAAATTCCTTTTCCCACAAGGTTAGATGGACAAAAGGCAACAGAGGAATCGTTCGCATCTTTCCGAGGAAGGGGGATATCTGGGCCCTTTATAGAAACTGGTCTCCTGATTGGAATAAAGATACTCCCGATGAAGTGAAGCACAAGTATGATATGGTGGAAGTACTTGATGATTTCAATGACAAGCAAGGTGTACTAGTTACACCACTTATCAAGGTTGATGGTTTTGTGGCAGTGTTTCAGAGGATTGAAGGTCATGATCTGGTAAGGAAGATTCCCAAAGTGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACAGGACAAGAAGCTCCTAATGCTCCAAAGGGTTGTCAAGAGTTGGATCCAGCAGCCACCTCTTTAGACCTCCTTCAGACAAAGAATGAAGCCAATGTTGAAAAATCAAAGGAAGACACAATTCCGGTGGTGATACAGAATTTGTTTTCTGCCTTGCAAAGCAAATGCCTTGACAATAGGTTCTAG 2268 0.4237 MECNKDEAVRAKEVAERKLSEKDYVGAKRFALKALNLYPALEGLTQFVTTLDVYISAEKKISGVTDWYGVLGVTPSADDETVKKQYRKLILALHPDKNKSPGADGAFKLVSEAWTLLSDKARRLAYNQKRSSTGFQHNAPNHVVSQPKAPNPNRMATPNARTGSNNAQAPPTSVPPPYRMVDTFWTICTRCSARLQYLRIYLNVALRCPNCNQAFVAVEKVPPADGVKSFNCSAQQHQQNSQPRAGGWDHPTTNPGRTHSVSQNIESSSVRGRSSFSNTNSQYAPHSRMHGFASKDSSASTPAASTKQQATVKSRSTCEGAPSIAARESSHMYKRSDGSFYNVQRTVKKMRSDDIHMGIETTHGFSRFTNKHRGMRELSTYELRNMLSNKAQNEIRKKLQEWKSTAEDKVTNKDKGTETQKGTLKDKTCSEKQEDKVMNKDKGNVRQKGLLNDKTTGSEKHEDSTINGNGHLERDPVPVTSDDIGKENQDYVIPVADSDFHNFDLERAENSFAEDQVWAAYDDDDKMPRFYVKVQKVMSTKPFKMSVSWLNSRSNKELGPMDWIGSGFYKTCGDFTIGKREITGSLNSFSHKVRWTKGNRGIVRIFPRKGDIWALYRNWSPDWNKDTPDEVKHKYDMVEVLDDFNDKQGVLVTPLIKVDGFVAVFQRIEGHDLVRKIPKVEMFRFSHQVPNYLLTGQEAPNAPKGCQELDPAATSLDLLQTKNEANVEKSKEDTIPVVIQNLFSALQSKCLDNRF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3484 755 MobiDBLite consensus disorder prediction 406 469 - -
Amo16g3484 755 MobiDBLite consensus disorder prediction 406 476 - -
Amo16g3484 755 MobiDBLite consensus disorder prediction 229 321 - -
Amo16g3484 755 SUPERFAMILY Chaperone J-domain 65 126 IPR036869 -
Amo16g3484 755 MobiDBLite consensus disorder prediction 131 169 - -
Amo16g3484 755 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Amo16g3484 755 MobiDBLite consensus disorder prediction 131 174 - -
Amo16g3484 755 PANTHER HEAT SHOCK PROTEIN-LIKE 1 733 - -
Amo16g3484 755 MobiDBLite consensus disorder prediction 229 318 - -
Amo16g3484 755 Pfam Domain of unknown function (DUF3444) 493 698 IPR024593 -
Amo16g3484 755 PANTHER BNAC03G44070D PROTEIN 1 733 - -
Amo16g3484 755 SMART dnaj_3 65 122 IPR001623 -
Amo16g3484 755 PRINTS DnaJ domain signature 102 122 IPR001623 -
Amo16g3484 755 PRINTS DnaJ domain signature 86 101 IPR001623 -
Amo16g3484 755 PRINTS DnaJ domain signature 68 86 IPR001623 -
Amo16g3484 755 CDD DnaJ 66 119 IPR001623 -
Amo16g3484 755 Gene3D DnaJ domain 55 148 IPR036869 -
Amo16g3484 755 Pfam DnaJ domain 66 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3484 Amo-Chr16 144193008 144195615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3484 4 223 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.140 2.59e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3484 - - aip:107647573 1485.32