Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3478 ATGTTCCGTTCTCAAAATTTCTCCATTTTGCTGTTGGTTCTTTTTCTGGCGCCAAATTCCGTTACAGTTAACTGCCGATGTACGGACAAATGTGGACGCATCAAGATCCAGTTCCCATTTCATCTCAAAAATAGCAACCTGAATGAAAACGCTACCTATCTACCTGGATTTGAACTCTCATGTAACGATAAACATCAAGCTCTGCTGAAACTTCCAAAGGTTCCATCAGTAAGCTTCTTTGTGAAGCAAATCGATTACAAATCTCAGCAAATTCAGATCTATTACCCAAATAACTGCCTTGCCAGCCAGCTTTTAGCACTCGGAAATTCGTCAACTTCACCTTTCCGATTCATATCACCATATTACGGCGGCGAAACTAGTTACAATAATGTCTCTTTCTTTCGTTGCGCTTCGAGTTCTTCCTATTCCTGTCCAATTTTGCAACTAGATTCTATTAGCGACATCATTGATCCAGGAATACTATCTTGCACCAAGGTGCGTGATGTTTTATCGGTCCAGTGGAGGTTTACGTATGATGATAAGACTAGTTTGTTTCTTGGATGGTCGAACCCTAACTGTGGGCAGTGTGAAGCACAGGGCAAGAAATGCAGACTCAAGAGCGATGGTATGAAAGAGGAAATTGAGTGTTTCCTTTGCAAAACAAACAAGATTTCGACATCCACTCTTGTTCTAATTGTTGCAGGGACAATAATTTGTTTGATGCTTTTGGTCTTGTTGGCCTTTGCAATGTACCATATTTATCGGTACTTTAAGACTAAAGGAGAAGACCAAGACAGGATAGAAAAATTCTTGGAGGATTACAGGGCCATGAAGCCTACAAGATTCACTTACAAAGATATTAAGAGAATCACAAATGGCTTTAAGGAAAGCTTAGGCGAAGGAGCACACGGAGCAGTATTCAAAGGAATGCTCTCCAAAGAAATTCTTGTTGCCGTGAAGGTACTCAATGATACACAAGGTGATGGCAAGGATTTCATAAATGAAGTGGGAACTATGGGAAAGATTCATCATGTCAATGTTGTTCGCTTGCTCGGATTCTGCGCAGACGGATTCCACCGTGCTCTTGTCTATGATCTGTTTCCGAACGGTTCGTTGCAGAAATTCTTAGCTCCACCGGATAACAGGGATGCTTTCCTTGGTTGGGTGAAGCTTCAGAGAATTGCTCTTGGTGTTGCCAAAGGCCTTGAGTATCTCCATCTTGGTTGTGATCATAGGATACTCCATTTTGACATAAATCCCCATAATGTGTTACTAGATGATCACTTCACTCCAAAAATAACAGATTTTGGCCTTGCAAAGTTGTGTCCGAAAAATCAAAGCACGGTGTCTATGACCGCAGCGAGGGGGACATTGGGCTATATTGCCCCTGAAGTATTCTCAAGAAATTTTGGTAACGTGTCGTACAAGTCTGATATTTATAGCTTCGGAATGCTGCTACTTGAGATGGTTGGAGGAAGAAAGAACACAAATGTGTCTGGTGAGGAAATTTTCCAAGTTTTGTACCCAGAATGGATCCATAATATGCTTGAAGGGAAAGACATCCACATTGATATTGACAATGAGGGAGACATGAAGATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAATCCTGTAGATCGTCCATCAATGAAAACTGTGGTACAAATGCTTGAAAGGGAAGGAGACAAGTTAATGGTCCCCCCTACACCGTTTGACTCCACTACCAGCTCAAGTAGAAACAATAATAATGCAGTTGTTCCATCAAGACATCTAAATTTTGAGCTAGAGGTTATTCCTGAGTTAGAGTAA 1824 0.4134 MFRSQNFSILLLVLFLAPNSVTVNCRCTDKCGRIKIQFPFHLKNSNLNENATYLPGFELSCNDKHQALLKLPKVPSVSFFVKQIDYKSQQIQIYYPNNCLASQLLALGNSSTSPFRFISPYYGGETSYNNVSFFRCASSSSYSCPILQLDSISDIIDPGILSCTKVRDVLSVQWRFTYDDKTSLFLGWSNPNCGQCEAQGKKCRLKSDGMKEEIECFLCKTNKISTSTLVLIVAGTIICLMLLVLLAFAMYHIYRYFKTKGEDQDRIEKFLEDYRAMKPTRFTYKDIKRITNGFKESLGEGAHGAVFKGMLSKEILVAVKVLNDTQGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDLFPNGSLQKFLAPPDNRDAFLGWVKLQRIALGVAKGLEYLHLGCDHRILHFDINPHNVLLDDHFTPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSFGMLLLEMVGGRKNTNVSGEEIFQVLYPEWIHNMLEGKDIHIDIDNEGDMKIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLEREGDKLMVPPTPFDSTTSSSRNNNNAVVPSRHLNFELEVIPELE* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3478 607 Gene3D Transferase(Phosphotransferase) domain 1 367 571 - -
Amo16g3478 607 Pfam Protein kinase domain 295 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3478 607 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Amo16g3478 607 ProSiteProfiles Protein kinase domain profile. 292 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3478 607 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 607 IPR045874 GO:0004672
Amo16g3478 607 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Amo16g3478 607 MobiDBLite consensus disorder prediction 574 590 - -
Amo16g3478 607 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 43 607 - -
Amo16g3478 607 MobiDBLite consensus disorder prediction 570 590 - -
Amo16g3478 607 SUPERFAMILY Protein kinase-like (PK-like) 270 563 IPR011009 -
Amo16g3478 607 Gene3D Phosphorylase Kinase; domain 1 265 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3478 Amo-Chr16 144034772 144037756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3478 55 575 Receptor kinase-like Gene Family AT1G66910 36.254 2.18e-102 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3478 Pkinase 6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3478 - - gmx:100819302 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3478 16 144034772 144037756 Amo16g3478 16 144034772 144037756 ECH