Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3477 ATGATATTTTATTTATTTATAAACTCCCAAAAATGGAAAAACCAAAATAAACAGCAGCTCACAAGAACTACAATGCAAACCCAAGCATCATTCCCCTGCTCTTTAATCACACAAAAAATTGTATCACTCCTTTTCACAATCCTCCTCCTTTTCGAACAACCATCCACCGCCAAGAAGCACCACTCGCCATGCCCCCCTTCTTCCTGCGGCCAAATCCGCAACATAACCTACCCATTCCGACTCAAAGGCGACCCAAGCCACTGCGGCAACAAAAGGTACGAACTCGAATGCGATAGCAACAACGCCACAGTGCTAACTCTATTCTCAGGTAACTACCACGTGCACCACATCGATTACAAGAATTACAGCATCAAGTTGAGTGATGCGGGTCTCAGCGACAACGCTAATTGTTCATTTATCCCTCGCAATTTCTTATATGATAGCAGTTTCAAGTTCGCCGTCGGCCCCGATGATTTCGGATCGCAACCGTTCACTTTAAACAATTTCGATCCAGATACAGTAGACACTTTCGATCCATCAAGAGTAGCGTATTTTAACTGCACTGATGCAGTAACTGACGACGCTGCATATGTGAAGGTAGATATAACCGCAAGTCGTTGTAGTACCTTGGGCTTAGGGCATGTGTATGTAATGGTGGGAGCATCGTACAGTGTGACTGAAATCAAGGTTGGGTGCAGTTTGATGGTGGCTACGCTTACGGATAAGGTTCCGGCGGAGATCGGAGAAGGGAATAACAACGTTTCTTATGAGGAGATCCGGAAGGTGGTTGGCGAAGGGTTTAGCGTCTCTTGGTTGCCGGCGGTTTGCGAGGAGAAGTGTGGAAAGAAGACAAATTGCAAGGTGGTCAATGTTTCGACTGGAGAAGTCCAATGTGACAGGCGCTATTGCCACTACGCTTACCATACAACCGATAAGTGCGGAATTGCAGAACAGGCTATCGGTTATGCTCGAGCTTATCTCAGAGGCATTGTATTTGGATTAGGAAGTAGAATAACATTCAGCACAAGAAACCTGGGCAACCCAGTTGGGCTGGAGTATTTTGACGGGGGAATATTCATTGGTAGAAATATTATACCAGTAATACTTGTAACTAGATACGTACTTGGAGTTGCAGTTCTACTTTCAGTATTGATCTACATATGGCGACGAAGACATTGGTCAATATATGGAAACATTGAACATTTTTTGCTAGACAGCAATCTAAATCCCATAAGGTATGAATACAAAGAAATCAAGAAAATGAGTGGTGGTTTCAAAGTGAAATTGGGTAAAGGTGGCTTTGGGGCTGTATACAAAGGAAAACTTCGAAGTGGTCCTGATGTAGCGATAAAGATATTGAACGAATCCAATGCTAATGGCCAAGACTTCATCAACGAAGTTGCTACAATTGGAAGAATACATCATGTTAATGTGGTACGTCTTGTTGGATATTGTGTCGAGAAGAAAAAGCGTGCCCTGGTGTATGAATTCATGCCTAATGGATCATTGGATAAATACATTTTCGCCAAGGAAGGGACTTTGCCTTTGAGTTACGAGAAGATGTATGAAATATCTCTTGGAGTGGCTCGTGGAATTGCGTATTTACATCAAGGTTGTGATATGCAAATTCTACATTTCGATATCAAGCCGCATAATATTCTTCTAGATGACAACTTCGTCCCAAAGGTGTCTGATTTTGGACTTGCAAAGCTGTATCCTGTGGATGATAGCACTGTCACTTTGACTGCAGCAAGAGGAACTTTAGGCTACATGGCTCCGGAGTTGTTCTACAAAAACATTGGAGGAGTATCTTATAAGGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCGAGTAGGAGGAAGAATTCAAATCCTAATGCCGATGAATCAAGCCAAATTTACTTCCCATTTTGGATACATGATCAGCTTTATGAAGAGAGAGAGATTGAAATCGAAGATGCCTCAGAGGAGGAAAAGAGCCTAGTCAAAAAGATGTTCTTAGTTGCACTTTGGTGCATACAGCTAAAGCCTAGTGATCGTCCTTCGATGAACAAGGTAGTAGAGATGCTGGAAGGGGATAACGACGGCAGTCTTGCATTGCCTCCAAAGCCTTCTTTCTATTCACATGAAGCTTCTAGATATGTTAAGGAGGTCAATTCCAACCAAGCGTCGAGCATGGATTCCTCTGGTACTAGTTATCTTGGTGAAACCACAACTGACTATTCAATGGAGGATGATGATTAA 2253 0.4265 MIFYLFINSQKWKNQNKQQLTRTTMQTQASFPCSLITQKIVSLLFTILLLFEQPSTAKKHHSPCPPSSCGQIRNITYPFRLKGDPSHCGNKRYELECDSNNATVLTLFSGNYHVHHIDYKNYSIKLSDAGLSDNANCSFIPRNFLYDSSFKFAVGPDDFGSQPFTLNNFDPDTVDTFDPSRVAYFNCTDAVTDDAAYVKVDITASRCSTLGLGHVYVMVGASYSVTEIKVGCSLMVATLTDKVPAEIGEGNNNVSYEEIRKVVGEGFSVSWLPAVCEEKCGKKTNCKVVNVSTGEVQCDRRYCHYAYHTTDKCGIAEQAIGYARAYLRGIVFGLGSRITFSTRNLGNPVGLEYFDGGIFIGRNIIPVILVTRYVLGVAVLLSVLIYIWRRRHWSIYGNIEHFLLDSNLNPIRYEYKEIKKMSGGFKVKLGKGGFGAVYKGKLRSGPDVAIKILNESNANGQDFINEVATIGRIHHVNVVRLVGYCVEKKKRALVYEFMPNGSLDKYIFAKEGTLPLSYEKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLYPVDDSTVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNSNPNADESSQIYFPFWIHDQLYEEREIEIEDASEEEKSLVKKMFLVALWCIQLKPSDRPSMNKVVEMLEGDNDGSLALPPKPSFYSHEASRYVKEVNSNQASSMDSSGTSYLGETTTDYSMEDDD* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3477 750 CDD STKc_IRAK 429 695 - -
Amo16g3477 750 SMART serkin_6 423 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3477 750 MobiDBLite consensus disorder prediction 721 750 - -
Amo16g3477 750 Gene3D Phosphorylase Kinase; domain 1 404 497 - -
Amo16g3477 750 ProSiteProfiles Protein kinase domain profile. 423 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3477 750 ProSitePatterns Protein kinases ATP-binding region signature. 429 451 IPR017441 GO:0005524
Amo16g3477 750 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 25 725 - -
Amo16g3477 750 Gene3D Transferase(Phosphotransferase) domain 1 498 701 - -
Amo16g3477 750 SUPERFAMILY Protein kinase-like (PK-like) 410 694 IPR011009 -
Amo16g3477 750 MobiDBLite consensus disorder prediction 721 742 - -
Amo16g3477 750 Coils Coil 647 667 - -
Amo16g3477 750 Pfam Wall-associated receptor kinase galacturonan-binding 64 128 IPR025287 GO:0030247
Amo16g3477 750 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3477 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Amo16g3477 750 PANTHER RUST RESISTANCE KINASE LR10-RELATED 25 725 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3477 Amo-Chr16 144029820 144034711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3477 42 710 Receptor kinase-like Gene Family AT5G38260 35.252 1.67e-104 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo16g3477 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3477 - - gmx:100820366 938.332