Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3474 ATGGAAGCACATGGCTCTAAGGATGCACAAGTCATTGAAATAAGTGGAGATCATGATGAAACAAGGAATCCAGGAGGGATCATGAAAACAAAATTGCAAATGTGCCAACAGCTTGCAATATTAATTGATGCGGCACATTTGCTTTCGGATGTTGCAGCCTTTGCCATTTCCTTATTTTCGCTATGGGCTGCTGGATGGGAAGCTAACCCCCGCCAATCGTATGGATATTTTAGAATAGAGATTCTTGGGGCTTTGGTTTCCATCCAATTGATATGGTTGCTTGCTGGAATTCTGGTATACAAAGCAGTCGACAGAATGGTAGCTGGTCCTCGTGAGCATCATCATGGCTGTGCTATTGGGCCACGGCCACGGCCACTGCCACGGCCAAGCTTTCGCATGGAAGTTTATCGTTCCTTAGGTGGTGCTCTAAAGCCAACAGATATTGACACGTTATGGGTTCATGTCACTTGTGCTTGGTTTCGGCCTGAAGTGGCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCGTCAAGTTCTTTTGTTAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGCTACCGAATGGAGTTGCACATTTCGGAGAAAAATGGTAAACAGACAACAAAAATGGTTTCCTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCCCTTGGGGTCATTTCAACTAAAAGTCTTCTACAAACTAAGAAAAAAACGGGTTCCAGGCTAATTTCCTCTAGAAGAACAAAGGTAGAAGAAACCCCTCAAGCAGAAGATACTGAACATGAGCCATTCTCTGCCGCTAGATGTCGAATCTTTCAAAGAACAAACTACACTAAAAAGAAATCAGCAGCTGATGCCGTTCCTCATCATGTGAGGGGTCCCTACCATCATCCTTTAGATGCAATACAGAGTTTGAATGCTCCCTACCATCATCCATTAAGAGCACAACTAATTGTCCTCTCAGAATCTGCCTCCTCACTCATAACCGTCCCTCCCCCAACATCAGGCACACCTTTATTAAATATAGATAGTTGA 1143 0.4348 MEAHGSKDAQVIEISGDHDETRNPGGIMKTKLQMCQQLAILIDAAHLLSDVAAFAISLFSLWAAGWEANPRQSYGYFRIEILGALVSIQLIWLLAGILVYKAVDRMVAGPREHHHGCAIGPRPRPLPRPSFRMEVYRSLGGALKPTDIDTLWVHVTCAWFRPEVAFASDEKMEPALGILSIPSSSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSRRTKVEETPQAEDTEHEPFSAARCRIFQRTNYTKKKSAADAVPHHVRGPYHHPLDAIQSLNAPYHHPLRAQLIVLSESASSLITVPPPTSGTPLLNIDS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3474 380 MobiDBLite consensus disorder prediction 273 300 - -
Amo16g3474 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 140 345 - -
Amo16g3474 380 SUPERFAMILY Cation efflux protein transmembrane domain-like 38 119 IPR027469 -
Amo16g3474 380 PANTHER PHD FINGER PROTEINS 140 345 - -
Amo16g3474 380 MobiDBLite consensus disorder prediction 280 300 - -
Amo16g3474 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 247 IPR013083 -
Amo16g3474 380 ProSiteProfiles Extended PHD (ePHD) domain profile. 127 245 IPR034732 -
Amo16g3474 380 Pfam PHD-zinc-finger like domain 138 244 - -
Amo16g3474 380 MobiDBLite consensus disorder prediction 1 23 - -
Amo16g3474 380 Gene3D Cation efflux protein transmembrane domain 32 121 IPR027469 -
Amo16g3474 380 Pfam Cation efflux family 37 119 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Amo16g3474 380 TIGRFAM CDF: cation diffusion facilitator family transporter 34 118 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3474 Amo-Chr16 143963516 143965580 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3474 36 112 Inorganic Solute Cotransporters AT2G46800 80.519 1.14e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3474 - - aip:107647579 416.772