Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3471 ATGGGGGCCAAGGCAAAGAAAGCTATGAAGAAGAGTTTGAAGAAGGCTACTTCTACCAAGCCATCATCTTCTTCCATCAACAAATCAGAGGCTCCTGATTATTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCCCTGAACAGAAGCCTTTGGAGAGTGCCGCAACAGTGTTGTATATTGGCCGCATTCCACATGGGTTTTATGAGGAGGAGATGCAAGGTTTTTTTGGACAATTTGGAACGGTCAAGAGATTGAGAATTGCAAGAAATAAGAAAACAGGAAAATCAAGGCATTTTGGGTTCATCGAATTTCAGTCTCCTGAGGTAGCTAAAGTTGTAGCTGAAACTATGCACAATTATCTGCTTTTCGAACACCTTCTCCAAGTCCACTTGATACCCCCTGAGGAAGTTCATCCACGATTATGGAGAGGTTTCAATTACAAGCACAAACCAATCGATTCAGTACAACTTGAACGAGGGCGACATGACAAGGAAAGAACATTGGAAGAGTACAATAAGTTGGTAGAAAAGATTGTGAAGCGTGACAATAAACGACGAAAAAGGTTGGAGGCTGCTGGCATTGATTACGAGTGCCCTGCGATTGTTGGTAACATCCATCCCGCACCGAAGAAAATAAAGTTTGAAGACTAA 651 0.4332 MGAKAKKAMKKSLKKATSTKPSSSSINKSEAPDYLPLEGGPARKLPEQKPLESAATVLYIGRIPHGFYEEEMQGFFGQFGTVKRLRIARNKKTGKSRHFGFIEFQSPEVAKVVAETMHNYLLFEHLLQVHLIPPEEVHPRLWRGFNYKHKPIDSVQLERGRHDKERTLEEYNKLVEKIVKRDNKRRKRLEAAGIDYECPAIVGNIHPAPKKIKFED* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3471 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Amo16g3471 216 SMART rrm1_1 57 130 IPR000504 GO:0003723
Amo16g3471 216 MobiDBLite consensus disorder prediction 1 47 - -
Amo16g3471 216 MobiDBLite consensus disorder prediction 15 30 - -
Amo16g3471 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 125 IPR000504 GO:0003723
Amo16g3471 216 PANTHER - 1 215 - -
Amo16g3471 216 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 215 - -
Amo16g3471 216 SUPERFAMILY RNA-binding domain, RBD 56 198 IPR035979 GO:0003676
Amo16g3471 216 Coils Coil 161 181 - -
Amo16g3471 216 CDD RRM_NIFK_like 57 130 - -
Amo16g3471 216 Gene3D - 2 138 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3471 Amo-Chr16 143912739 143916727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3471 56 129 Eukaryotic Initiation Factors Gene Family AT1G71770 33.784 6.56e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3471 K14838 - gmx:100814276 326.25