Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3466 ATGTATGCAGAAACTGGTCTTTTCTTCCCTTATTTGCAGAACTTCTCTCAAGAGCTTCAACAGCTTGAGGAGTATTGCATGAACCAGAAATCCATTGATTCAATGAGTGACCTTGCTCAATCTTCAGTAATGACAGAGTATGATCTGTTAGTAGAAGGAGATTTGTTCAAAGCACCGGAACCTATCATCGAAGAACCACTGATAGACGTGGATCCGATGACTGCAGCAGCCATCTCAATGATATCTTGCGGGGAAGATGTATCCTCACAGGGTCTAGAATCTCAGGACATCGACATTCTTCAGAACGATAATCAGCTCTTGAGTGAGGTGTTCTACGAGTGCAAAAAGGATCTCATAGAGAAGGCAGCTATAGAGTCACCGCTGTCTGATATATTGGAAATCAATATTCCTGCTCTGAATGTAGATGACAGTTTCACTCAAGAAAATAAACCAATTCCTGATGTGCCATTGGCCAAGAGTGTCAGTTCTAGAAGCTTGAGTGCAATGGATTGGATGAATTCTGTTGGCATGAAGCCTGCTTTTCTAGAATTCCCTGGAATTGATTTCAATGAGGTTTATGGCATGCGACGAGCATTTAGTGACGGAGATATAAAGACACTTGGTAATGGAAACATGAATGTTGCTCAATCTCCCCATGATAGGCCTTCTCTTCTTAGCAACTGCACCAGCGAGGAACGGCAAGAAAAACTCTCGAGATATAGAAACAAGAAGACAAAGAGAAATTTTGGAAGGAAGATTAAGTATGCTTGCAGGAAGGCACTCGCCGACAGCCAGCCAAGAATCCGCGGAAGGTTTGCAAAGACGGAAGAATCTGACATAAAGAGGCAATGA 852 0.4272 MYAETGLFFPYLQNFSQELQQLEEYCMNQKSIDSMSDLAQSSVMTEYDLLVEGDLFKAPEPIIEEPLIDVDPMTAAAISMISCGEDVSSQGLESQDIDILQNDNQLLSEVFYECKKDLIEKAAIESPLSDILEINIPALNVDDSFTQENKPIPDVPLAKSVSSRSLSAMDWMNSVGMKPAFLEFPGIDFNEVYGMRRAFSDGDIKTLGNGNMNVAQSPHDRPSLLSNCTSEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESDIKRQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3466 283 Pfam CCT motif 233 275 IPR010402 GO:0005515
Amo16g3466 283 ProSiteProfiles CCT domain profile. 233 275 IPR010402 GO:0005515
Amo16g3466 283 PANTHER CCT MOTIF FAMILY PROTEIN 26 281 - -
Amo16g3466 283 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3466 Amo-Chr16 143851348 143854748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3466 208 279 C2C2-CO-like Transcription Factor Family AT5G57660 40.506 4.09e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3466 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3466 - - gmx:100814332 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3466 16 143851348 143854748 Amo16g3466 16 143851348 143854748 ECH