Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3462 ATGGAGTTCGGTAGGATCGGACCCACCGACCCGGGTGGCTCTTCACGCCGTTCTACCGCTCCACTCACCGGACCTTCTTCCGATTCCACTTCTTCCACAACAAAGAAGAAGCTCATCATGATCTCCCTCCTCGCCGCAGCCTTGATTGTCGCCTCCGCTGTCTCCGCTGCTCTAATTGCCGTCACTCGCTCCCGTGCCTCGGCCGGGAACTCGCCGAACCTCCGCCGGGAACCAACGCAGGCAATCTCCAAGACCTGCAGCAAGACTCGGTTCCCCACACTTTGTATAACCTCTCTCATGGATTTCCCGGGGTCCGAAACCGCCACGGAGCAGGACCTTGTCCACATTTCCGTCAACATGACCCTCCACCATTTCAGCACCGCCTTCTACGCCTCCACGGGCATCGCCTTCGGCGACACGGACACACGACTCCGTGCCGCTTACGAAGACTGCCTCGAACTCATGGAGGACTCCATGGATTCGCTGTGGCGGTCGCTGAGCTCAGTGGCCCCGTCCTTGGATTCATCATCCTTCGGCGATGAAGCCATAAGGCCCGCCGCCGTGGGTTCCACCGAGGACGTGACAACCTGGCTCAGTGCTGCGCTGACGAACCAGGACACGTGCTCGGAGGGGCTCGAGAACGCGACGGGAACACTGAAGGACCAGATGGTTAATAATTTGAAGAACCTGGCGGAACACGTGAGCAATTCTCTCGCGATATACTCGGCCGGAAGTGGCACTGGGGATTTCTCGGGGGTGCCTATACAGAACAAGAGACGGTTAATGGGAACCGGAGAGGAGGAGAACAAATCCAATAACTCGCGAGATAATGATAATAATAATAATAATACTCATTTCCCGAGATGGTTGAGCAAACGAGATAGGAGATTGCTGAGTTTGCCAGTATCGGCGATACAAGCCGATATAATAGTGTCGAAGAACGGTGATGGAACGGTGAAGACAATCGCAGAGGCGATTAAGAAGGCGCCGGAGAAAAGTAGCCATCGCTTCATCATATACGTTAAGCAAGGAAGGTATGAGGAGGATACTTTGAAAGTGGGTAGAAAGAAAACCAACATAATGTTCATAGGAGATGGAAGGGGCAAAACGGTCATCACAGGAAAGAAAAATGTTGCTGATGGCATCACCACATTCCGCACAGCATCCTTCGCTGCTAGTGGTGCCGGTTTCATTGCACGAGACATCACATTTGAAAACTACGCCGGACCACAGAAGCACCAAGCCGTGGCGCTTCGCGTAAGCGCCGACCACGCAGTGGTGTACCGGTGCAGCATCAAAGGCTACCAAGACGCATGCTATGTACACTCCAACCGCCAGTTCTTCCGGGAATGCGATATTTACGGCACCGTAGATTTCATATTTGGAAATGCTGCAGTGGTTTTCCAAAAATGTATTATGTATGCTAGAAAGCCCATGGCCCAACAAAAAAACACTATCACGGCCCAAAACAGAAAGGACCCAAATCAAAACACGGGCATATCCATCCACGATTGTCGGATACTACCCGCCCCGGATCTCGCGGCTGCCAAAGGCAGCGTTTCCACCTTTTTGGGCCGCCCATGGAAGCAATACTCAAGAACAGTGTACTTGTTGTCTTACATGGATGATCACATAAACCCAAGTGGGTGGTTGCCGTGGAATGGGGACTTTGCATTGGACACATTGTATTATGGTGAGTACATGAATTCCGGGCCAGGTGCGGCCGTGGGTCAACGGGTCAAATGGAAGGGGTACCGGGTTATCACGTCCACAGTGGAGGCAAGTAGATTCACGGTGGCCCAATTTATCTCCGGCTCGGCGTGGCTACCATCCACCGGAGTGGCATTCTTGGCTGGGTTGTCAACTTGA 1869 0.5313 MEFGRIGPTDPGGSSRRSTAPLTGPSSDSTSSTTKKKLIMISLLAAALIVASAVSAALIAVTRSRASAGNSPNLRREPTQAISKTCSKTRFPTLCITSLMDFPGSETATEQDLVHISVNMTLHHFSTAFYASTGIAFGDTDTRLRAAYEDCLELMEDSMDSLWRSLSSVAPSLDSSSFGDEAIRPAAVGSTEDVTTWLSAALTNQDTCSEGLENATGTLKDQMVNNLKNLAEHVSNSLAIYSAGSGTGDFSGVPIQNKRRLMGTGEEENKSNNSRDNDNNNNNTHFPRWLSKRDRRLLSLPVSAIQADIIVSKNGDGTVKTIAEAIKKAPEKSSHRFIIYVKQGRYEEDTLKVGRKKTNIMFIGDGRGKTVITGKKNVADGITTFRTASFAASGAGFIARDITFENYAGPQKHQAVALRVSADHAVVYRCSIKGYQDACYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCIMYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLAAAKGSVSTFLGRPWKQYSRTVYLLSYMDDHINPSGWLPWNGDFALDTLYYGEYMNSGPGAAVGQRVKWKGYRVITSTVEASRFTVAQFISGSAWLPSTGVAFLAGLST* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3462 622 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 241 IPR006501 GO:0004857
Amo16g3462 622 PANTHER PECTINESTERASE 26 620 - -
Amo16g3462 622 ProSitePatterns Pectinesterase signature 2. 453 462 IPR033131 -
Amo16g3462 622 Pfam Plant invertase/pectin methylesterase inhibitor 81 240 IPR006501 GO:0004857
Amo16g3462 622 MobiDBLite consensus disorder prediction 262 288 - -
Amo16g3462 622 CDD PMEI-like_3 86 246 - -
Amo16g3462 622 SMART PMEI_2 77 240 IPR006501 GO:0004857
Amo16g3462 622 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 242 IPR035513 -
Amo16g3462 622 Pfam Pectinesterase 308 605 IPR000070 GO:0030599|GO:0042545
Amo16g3462 622 SUPERFAMILY Pectin lyase-like 303 619 IPR011050 -
Amo16g3462 622 MobiDBLite consensus disorder prediction 1 32 - -
Amo16g3462 622 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 243 IPR035513 -
Amo16g3462 622 PANTHER PECTINESTERASE 26 620 - -
Amo16g3462 622 Gene3D - 302 620 IPR012334 -
Amo16g3462 622 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3462 Amo-Chr16 143607820 143613736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3462 1 621 Carbohydrate Esterase AT5G53370 60.417 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3462 - - gmx:106796002 887.486