Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3459 ATGTGTAAAGATGAGTGTGGCAATATGAGGGCAGAAGATGAGGGAGCTGGAGAGACAAAGCCCATGAGAAAACTTGACACATTATCAGTTACCAAGCACACGAAGAGCTTGCGTCGCCTAAGATCAGTTACACTCACTAGGGAATCAAACACAGTAGGTGACCAGAAAAAGGGGCTAATAAGCCAGAAAATGAGCATGAAGCTGAGCCTCTTCATATTTGCTTTCATGATCATTGGAGCAATGTTCTTTGGTGCTGAGGCTGAACTATTGGAAGATGAACAAGCTTTGCTTGATTTCTTTCACAAAATTGATCACTCAAAGCATCTCAATTGGGGTTACAAGACTTCTCTATGCAAGAGCTGGACAGGAGTTACCTGTGACTCTCACCAATCGCGAGTCGTCGGCCTCAGGCTACCACGAGCCGGATTAATTGGTCCCATACCATCCAACACTCTCAGTCGCCTCTCGGCCCTTCAGACTCTGAATCTTGAATCAAATAGAATAACTGGTCCATTGCCATTGGATTTTTCAGTTTGGAAAAATCTTACCATAGCAGATTTTTCCAACAATTCTTTCATTGGAAGCATCCCTTCCTCAATTTCAAAGTTGACTCATCTCAATTCTTTAGATTTGTCCCACAACTCTCTTTCGGGTGAAATTCCTGACCTCAATGTTCCTAGCTTGAAAGAGCTGAATTTGGCCAACAATAACCTTAGTGGAATTGTGCCAAAATCCCTTCAGAGATTTCCGAGTTGGGTCTTTTCCGGTAACAAGCTTAATCTTGATCTTACTCTTAATCACACCTCTGAATATGCATCTGCTAATTCTCCTCTTCAACAACCGAATAATTCTCACCCAACAAGGAAAAACAAAAGGCTCAGTGAACCTGCATTGCTTGGTATCATAATAGCTGTTAGTCTGGTGGGATTTGCAGCCATCGCGAGTTTCGCAATTGTGTTCTGTTATAAGAAAGGAAGTGGTGGTGGAGGTGGACAGTCAGTTATGAAGTCCCATAAAACAGAATTCTCGTCGAAGACAGAAGCTTCGTTGAGCAGAGACAGGAACAAAATAGTCTTCTTTGAAGGCTGCAATCTTGCATTTGACCTGGAGGACTTGTTGAGAGCTTCTGCTGAGGTTCTTGGAAAGGGCACATTTGGAACTGTCTATAAGGCTGCAATAGAAGATGCAACGACGGTGGCAGTGAAGAGGTTGAAAGAGGTAACTGTCGGAAAACGCGAGTTCGAACAGCAGATGGAGGTGGTGGGGAGAATTAGGCATGACAACTTGGCTGCTCTAAGAGCATATTATTACTCAAAGGAGGAGAAACTTATGGTATATGATTATTATGAACAGGGCAGTGTTTCTTCAATGTTACATGATTGGGAAAGTCGGCTAAGGATTGCGATGGGCACAGCAAGAGGCATTGCTCATATCCATGCTCAAAACGGAGGGAAACTTATCCACGGTAACATTAAGTCCTCAAATATCTTTCTCAACTCCCAGGGATATGGTTGTATATCGGACACCGGCCTCGCCACATTAATTAGCCCAATACCACCAGCAGCACTAAGGGCAGCAGGATACCGTGCACCAGAAGTAACCGACACGCGGAAGGCGACGGTTGCAGCTGATGTCTACAGTTTCGGAGTCCTCCTTCTAGAGCTCCTAACAAGAAGGTCTCCAATGCACGCCACTGGAGGAGAGGAAGTAGTCCACTTAGTTAGGTGGGTGAACTCTGTTGTTAGAGAGGAGTGGACTGCAGAAGTCTTTGATGTGGAATTACTAAAGTACCCTAACATAGAGGAGGAAATGGTTCAGATGCTACAATTGGGAATGGCATGTGTTGCTAGGGTTCCAGATAAGAGACCAACAATGTTGGAAGTGGTGAAAGTGGTGGAGGAAATTCGATTACATAGTGGGAATAGACCGTCCTCGGAATCTAGATCAGAGGGTTCTACACCAAATAGAGGACATGCTTCCACATCAATTATTACAGAGTGA 2001 0.4433 MCKDECGNMRAEDEGAGETKPMRKLDTLSVTKHTKSLRRLRSVTLTRESNTVGDQKKGLISQKMSMKLSLFIFAFMIIGAMFFGAEAELLEDEQALLDFFHKIDHSKHLNWGYKTSLCKSWTGVTCDSHQSRVVGLRLPRAGLIGPIPSNTLSRLSALQTLNLESNRITGPLPLDFSVWKNLTIADFSNNSFIGSIPSSISKLTHLNSLDLSHNSLSGEIPDLNVPSLKELNLANNNLSGIVPKSLQRFPSWVFSGNKLNLDLTLNHTSEYASANSPLQQPNNSHPTRKNKRLSEPALLGIIIAVSLVGFAAIASFAIVFCYKKGSGGGGGQSVMKSHKTEFSSKTEASLSRDRNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAAIEDATTVAVKRLKEVTVGKREFEQQMEVVGRIRHDNLAALRAYYYSKEEKLMVYDYYEQGSVSSMLHDWESRLRIAMGTARGIAHIHAQNGGKLIHGNIKSSNIFLNSQGYGCISDTGLATLISPIPPAALRAAGYRAPEVTDTRKATVAADVYSFGVLLLELLTRRSPMHATGGEEVVHLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVQMLQLGMACVARVPDKRPTMLEVVKVVEEIRLHSGNRPSSESRSEGSTPNRGHASTSIITE* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3459 666 ProSiteProfiles Protein kinase domain profile. 374 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3459 666 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515
Amo16g3459 666 Pfam Leucine rich repeat N-terminal domain 91 127 IPR013210 -
Amo16g3459 666 ProSitePatterns Protein kinases ATP-binding region signature. 380 411 IPR017441 GO:0005524
Amo16g3459 666 Pfam Protein kinase domain 377 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3459 666 MobiDBLite consensus disorder prediction 639 666 - -
Amo16g3459 666 MobiDBLite consensus disorder prediction 644 666 - -
Amo16g3459 666 Gene3D Phosphorylase Kinase; domain 1 339 448 - -
Amo16g3459 666 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Amo16g3459 666 MobiDBLite consensus disorder prediction 1 20 - -
Amo16g3459 666 PANTHER LRR RECEPTOR-LIKE KINASE 75 170 - -
Amo16g3459 666 PANTHER LRR RECEPTOR-LIKE KINASE 162 660 - -
Amo16g3459 666 PANTHER OS05G0588300 PROTEIN 75 170 - -
Amo16g3459 666 PANTHER OS05G0588300 PROTEIN 162 660 - -
Amo16g3459 666 Gene3D Ribonuclease Inhibitor 90 269 IPR032675 -
Amo16g3459 666 Gene3D Transferase(Phosphotransferase) domain 1 449 653 - -
Amo16g3459 666 PRINTS Leucine-rich repeat signature 225 238 - -
Amo16g3459 666 PRINTS Leucine-rich repeat signature 206 219 - -
Amo16g3459 666 ProSiteProfiles Leucine-rich repeat profile. 205 226 IPR001611 GO:0005515
Amo16g3459 666 SUPERFAMILY Protein kinase-like (PK-like) 378 632 IPR011009 -
Amo16g3459 666 SUPERFAMILY L domain-like 104 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3459 Amo-Chr16 143548808 143553451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3459 81 654 Receptor kinase-like Gene Family AT4G23740 50.872 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo16g3459 Pkinase 7.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3459 - - aprc:113851984 801.586