Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3455 ATGAGCCAGTGTGTTCCCAGCTGGGAGGTGGAGGATACCAATCCACCGCCCCCAAGACCCTCTCTACGTTCCAACTCCAACTCAACCATCCCTGACGTTCCCATGTTAGACTATGAAGTCGCAGAACTAACATGGGAAAATGGACAGCTATCAATGCATGGGTTAGGGTTCCCGCGAGTGCCGACGAAATCCTCGGCGGTTACAACAACCGCCAATAAGTACACATGGGAAAAGCCTCGTGCAAGTGGCACATTGGAATCCATAGTCAACCAAGCAACTACCACACCCCAAAACGCCAAATCAACAACCTTCCACGGTTTCGGCGGTGGTGGCAACGGAGGCGGTGTCTATGAAAATCTGTTAGTCCCGTGGGTTGATCCCCACCGTGTCCCGGCCACCGTTATTTCTCCGGGAACTTCAAACACCATGACCATGGACGCGCTGGTACCGTGCTCAAACCGGGTAGAGGAGCAAAGAACGCCGCAAGTTATGGACTCCATCTCCGGAGGGCTTGGACCGTGCATGGCGGGTCGCACCACACGTATGGGCAGCGGTGATGCCAAAGATGGAGGCGCCCTTGAAAAACGCGCCGCCATGGTGAGACGTGTCCCGGCACCGACGGTGTCGGCACATGAGATGAGTAGCAGGGATCAGAGTGTGAGTGGCAGCGCCACCTTTGGGAGGGAAAGCCGGCACGTGACACTTGACACGTGCGAGAGGGAGTTCGGAGTGGGTTTCACTACCTCGACGTCGATGGGGTCGCCGGAAAATACAAGCTCTGCAAAGCAGTGCACCAAGACCAACACCATTGACGACCATGATTCCGTTTGCCACAGTAGATCAATGAGAGAGGATGGAGATGAGGAGGAGAAGAAGAAAGAAACTGGAAAATCTTCTCTGTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCTAGCAAGACGGACAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTTAAACAGTTGCAAGCACAAGTGCAGATGGTGAACAGGATCAACATGTCATCCATGATGCTTCCCATGACCATGCAACAACAGCTTCAAATGTCAATGATGGCTCCCATGGGCATGGGAATGGGGATGGGGATGGGCATGGGCATGGCGGGGATGGGCATGGGCATGGATATGAACACCCTTAGTCGCACTAATATCCCTCCTGGAATCCCTCCAGTCCTCCACCCTTCTCCCTTCATGCCTATGCCTTCTTGGGATGCTGCTGCTACCGCCACTGCTGCCGCCGCAACTGGAGCTGCCGACCGACTTCAAGGACCTACACCCTCCGCCATGCCTGACCATTTATCCTCATTTTTCGGATGTCCATCACAGCCCATGAGCATGGATGCGTACAGTAGGATTGCTGCCATGTACCAGCAGCTTCAGCACCAACAACCTCCACCTTCAGGTTCCAATAAGACCTGA 1518 0.5303 MSQCVPSWEVEDTNPPPPRPSLRSNSNSTIPDVPMLDYEVAELTWENGQLSMHGLGFPRVPTKSSAVTTTANKYTWEKPRASGTLESIVNQATTTPQNAKSTTFHGFGGGGNGGGVYENLLVPWVDPHRVPATVISPGTSNTMTMDALVPCSNRVEEQRTPQVMDSISGGLGPCMAGRTTRMGSGDAKDGGALEKRAAMVRRVPAPTVSAHEMSSRDQSVSGSATFGRESRHVTLDTCEREFGVGFTTSTSMGSPENTSSAKQCTKTNTIDDHDSVCHSRSMREDGDEEEKKKETGKSSLSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMAGMGMGMDMNTLSRTNIPPGIPPVLHPSPFMPMPSWDAAATATAAAATGAADRLQGPTPSAMPDHLSSFFGCPSQPMSMDAYSRIAAMYQQLQHQQPPPSGSNKT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3455 505 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Amo16g3455 505 MobiDBLite consensus disorder prediction 246 324 - -
Amo16g3455 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Amo16g3455 505 MobiDBLite consensus disorder prediction 211 230 - -
Amo16g3455 505 PANTHER TRANSCRIPTION FACTOR UNE10 1 502 - -
Amo16g3455 505 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 502 IPR031066 -
Amo16g3455 505 Gene3D - 301 366 IPR036638 GO:0046983
Amo16g3455 505 CDD bHLH_AtPIF_like 306 367 - -
Amo16g3455 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 368 IPR036638 GO:0046983
Amo16g3455 505 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g3455 505 MobiDBLite consensus disorder prediction 205 232 - -
Amo16g3455 505 MobiDBLite consensus disorder prediction 309 324 - -
Amo16g3455 505 MobiDBLite consensus disorder prediction 267 300 - -
Amo16g3455 505 MobiDBLite consensus disorder prediction 246 266 - -
Amo16g3455 505 SMART finulus 312 361 IPR011598 GO:0046983
Amo16g3455 505 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3455 Amo-Chr16 143450791 143459647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3455 1 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.842 5.07e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g3455 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3455 - - ahf:112697399 889.797