Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3440 ATGGACTCCATAAATCTGAGCTACGAGCAGAAGCTTAAAGTTGTGGCACGAATCGTAGACGAATACGACGCACGCGTTTGCGACTGGCCGCCCAGTGAGGTAGAGCTTGGGCTTACGGCGACCCTCAAACCCCACCAGGTTGAAGGGGTTTCATGGCTTATATGGAGGTATAAACTCGGGGTCAACGTCGTTCTCGGGGATGAGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTTCTATGCTATCTAAAAGTGTACCGATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTRGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGATCTGCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTYCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTACAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTTGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCMTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATGAAGAAAATGAAGCATCTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACACCCCACTGAGATGAATGACAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTTCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACRATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCRAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTTGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCAAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTATACTATTATCGAAGAGTGCGCTAA 2634 0.4161 MDSINLSYEQKLKVVARIVDEYDARVCDWPPSEVELGLTATLKPHQVEGVSWLIWRYKLGVNVVLGDEMGLGKTLQAIGFLCYLKVYRLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRDLRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLXTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNXGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHEENEASGVGISDLKSIIFGLHPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGSLSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRVR* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3440 877 SMART ultradead3 38 238 IPR014001 -
Amo16g3440 877 Gene3D Leucine Aminopeptidase, subunit E, domain 1 704 877 IPR043472 -
Amo16g3440 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Amo16g3440 877 SUPERFAMILY Macro domain-like 705 872 IPR043472 -
Amo16g3440 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 540 IPR001650 -
Amo16g3440 877 PANTHER HELICASE CHR10-RELATED 12 872 - -
Amo16g3440 877 Pfam Helicase conserved C-terminal domain 369 493 IPR001650 -
Amo16g3440 877 Gene3D - 288 601 IPR027417 -
Amo16g3440 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 537 IPR027417 -
Amo16g3440 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 275 IPR027417 -
Amo16g3440 877 Pfam SNF2-related domain 58 348 IPR000330 GO:0005524|GO:0140658
Amo16g3440 877 CDD SF2_C_SNF 367 504 - -
Amo16g3440 877 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 12 872 - -
Amo16g3440 877 SMART helicmild6 398 493 IPR001650 -
Amo16g3440 877 Gene3D - 23 287 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3440 Amo-Chr16 143142444 143166345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3440 369 523 RAD5 or RAD16-like Gene Family AT5G22750 34.839 1.87e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo16g3440 SNF2_N 2.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3440 K20092 - gmx:100797182 1227.23