Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3424 ATGTTTTCAATGGGCAGCATGGGTGAGTCAGACAGAAAACGGCGTCACTTTAGCTCCCTGTCACCGACGGCAGCACCTGCTACTGCCAAGAAGCTGCCCTTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTTTCAAAATCAAAAGCTTATGCAGAAATTAGAAACACAGAAGCTAGAGCATACGGCTCTTGAGAATAAATTTTCTCAAATGAAGGAGAGGCAACAGTCATATGACTCTGCTTTAACAGTGGTTAAGAAAAACTGGGAACAGCTGGTTAATGACTTGGCATCGTGTTCTGAACGCTCGAGAGAGTATATCTGCAACTTGGATTCAAGATACGCTGCCGTTGCTAGTGATGATAGTCCATCAACTGTTCATGATGTTTTTCTCAGCAGACTGATGCAAACTGGTGCAACTGAAAGCTCTTCCACTTACAACTGTGTAAACCAGGTGGAAGAGCAGAGACAATTGAATTCCGAAAAAGAACAAAGCATTTTGAAAAACGTTGTTACAACTATTCATAAATTTTGGCGTTTGAAGGATGGATTGCATACTGCAGTACTGAAGAAGCTTCCAGGAGATGTTTCATACAGGCAGAAGCTTTCCGCTGATTTAGAAGGGGAAGTTAAAAATTTGAGGTCAGCATTCAGTGAATTGCATTTAAAGCACAAGTCTTTAGCAAGTGAGTTCCAAGCTCGTAGAGATCTTGATGCCAAAAATAAAGCAGAACTTTGTAAATTGAAAGGGGAGCTTGAACGCATTCTTGCAGAACTGGAAGAAAGCAATAGCAAACTTTTAACTCTTAAAGCAGAGAGAGATTCAGCAAAGGGGGCAGTTCTCCCTGTCTTAAATGTTGGAACTGCGCATGTTGCTAGTGATAAAGTCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTCTGAAGGACCTATTGGACCAAGGTTCGTCTCGATTAGTGGAACTGAAAGGTCTTCACGAGGAAAGAATAAGAATATTGCAGCAGTTGTGCGATCTACAGAACACGTTGAAGAATTTGGATTGTATTACTTCTTCCCATTGCTTCCAATTGGTTAGAGATCAGATAGAAAAGTCAAAAGCCGAAGTTCACGAGTATCAGGCTTTATTCGAGAAACTACAGGTTGAGAAAGACAATCTTGTGTGGAAGGAGAGGGAATGGTACATTAAAAATGACTTAGCAGATATTTTTCAAAGATCAGTGTCAGTTGCTGATTCTAGAGTGGCTGATTTACGGTCTGAGATACAGAAAAAGATAGATGAAAGAAATGTGATTGAAAATAAACTGCATGAGGAAGCAAGAGAACCGGGAAGGAATCAAGTTATAGGAGAATTTAAATCTTTGCTTTCTTCATTTCCTGAGGAAATGGAATCTATGCAAAGTCAACTAAGCAAGTATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCTAATATTCTTGACAGGAAGGTAAAGGAATGTGATGTTTTCACTGTTAGGGCTGCTGGTCAAGCTGCTGAAATAAAGAGGCTGCTTGGTGTGGTTGAAGAATTGAGAGAGAGTGAGCGGGATTTGAAGTTTATACTGGAAATGTTTAGACGTGAATCCATTGATTCAAGGGATATCATGGAAGCCCGTGAGGCAGAATACAGAGCATGGGCAAATATTCAAAGTTTGAAAACTTCTCTTGATGAGCATGGCTTAGAACTGCGTGTTAAGACAGCAAATGAAGCTGAGGCCAAATCTCAACAAAGGCTGGCTGCTGCTGAAGCTGAGATAGCTGCCATGAGACAGAAATTAGAAGATTCTAAAAAGGAGATGTCTGAACTGTCTGTTGTATTAAGATCAAAAAATGGAGAAAATGAGGCCTACTTGTCTGAAATAGAGTCTATTGGGCAAGCATATGATGAAAAACAGACTCAAAACCAGCATATGCTGCAGCAGATTACTGAGAGGGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCAAGACAAAAGCAAGATTCTTTGGTCATGGAAAAGCGGGTAATGCAACACGAGATCCAGCAAGCAAATGTAACCCGAAATTTATATGATTCAAAAGCTGCGAGAATTGAGGACCAGTTGAAATTTTGTTCAGATCAAATTCAAAGACTAATAGAGGATAAGATGCAAAGTTCTGTCACTTTGGAAAACACTCATAGAAGGCTGTTGGATGTTAGAAGATCATCTCAACAGGCTAAGGATACAGTTACAGAGGTGCAATCTAAATCTGGTAGTAGTCGAGTTACTTGTATGGAGTTACATGTTGAACTTGAGAAAGAAAGATTTTCCAAGAAAAGAATAGAGGAGGAGCTGGAGGTTTCTAGGAGAAAGCTTTCGCGCCTTAAAGAACAGAATGAAGGATGCTCGGTGATTGAAAGACTCCAAGAGGAACTGGCAGAGTACCGGGAAATTGTTAAATGCAGTATCTGCCAAGACCGAACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTTTGCGGTACATGTATCCAGAAAGTATCTGGGAGTCGACACCGCAAATGTCCACAGTGTAGCACAAGCTTTGGGGCTAATGATGTTAAGCCTGTTTACTTGTGA 2652 0.4035 MFSMGSMGESDRKRRHFSSLSPTAAPATAKKLPFLPISEDKKLDIAVLQFQNQKLMQKLETQKLEHTALENKFSQMKERQQSYDSALTVVKKNWEQLVNDLASCSERSREYICNLDSRYAAVASDDSPSTVHDVFLSRLMQTGATESSSTYNCVNQVEEQRQLNSEKEQSILKNVVTTIHKFWRLKDGLHTAVLKKLPGDVSYRQKLSADLEGEVKNLRSAFSELHLKHKSLASEFQARRDLDAKNKAELCKLKGELERILAELEESNSKLLTLKAERDSAKGAVLPVLNVGTAHVASDKVRDKQKDLQDMESTLKDLLDQGSSRLVELKGLHEERIRILQQLCDLQNTLKNLDCITSSHCFQLVRDQIEKSKAEVHEYQALFEKLQVEKDNLVWKEREWYIKNDLADIFQRSVSVADSRVADLRSEIQKKIDERNVIENKLHEEAREPGRNQVIGEFKSLLSSFPEEMESMQSQLSKYKESASDIHSLRADVQSISNILDRKVKECDVFTVRAAGQAAEIKRLLGVVEELRESERDLKFILEMFRRESIDSRDIMEAREAEYRAWANIQSLKTSLDEHGLELRVKTANEAEAKSQQRLAAAEAEIAAMRQKLEDSKKEMSELSVVLRSKNGENEAYLSEIESIGQAYDEKQTQNQHMLQQITERDDYNIKLVLEGVRARQKQDSLVMEKRVMQHEIQQANVTRNLYDSKAARIEDQLKFCSDQIQRLIEDKMQSSVTLENTHRRLLDVRRSSQQAKDTVTEVQSKSGSSRVTCMELHVELEKERFSKKRIEEELEVSRRKLSRLKEQNEGCSVIERLQEELAEYREIVKCSICQDRTKEVVITKCYHLFCGTCIQKVSGSRHRKCPQCSTSFGANDVKPVYL* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3424 883 PANTHER RING FINGER PROTEIN-RELATED 4 883 IPR013956 GO:0004842|GO:0010390
Amo16g3424 883 SUPERFAMILY RING/U-box 825 882 - -
Amo16g3424 883 Pfam Zinc finger, C3HC4 type (RING finger) 829 871 - -
Amo16g3424 883 Coils Coil 52 79 - -
Amo16g3424 883 Coils Coil 788 808 - -
Amo16g3424 883 Coils Coil 247 277 - -
Amo16g3424 883 SUPERFAMILY Bacterial hemolysins 190 386 - -
Amo16g3424 883 Coils Coil 421 448 - -
Amo16g3424 883 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g3424 883 Coils Coil 815 835 - -
Amo16g3424 883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 4 883 - -
Amo16g3424 883 SMART ring_2 831 869 IPR001841 -
Amo16g3424 883 Coils Coil 711 731 - -
Amo16g3424 883 Coils Coil 369 389 - -
Amo16g3424 883 Coils Coil 301 321 - -
Amo16g3424 883 CDD RING-HC_BRE1_like 829 870 - -
Amo16g3424 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Amo16g3424 883 ProSiteProfiles Zinc finger RING-type profile. 831 870 IPR001841 -
Amo16g3424 883 Coils Coil 585 626 - -
Amo16g3424 883 ProSitePatterns Zinc finger RING-type signature. 846 855 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3424 Amo-Chr16 142799875 142819057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3424 831 882 C3H Transcription Factor Family AT2G42030 37.736 4.80e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3424 K10696 - gmx:100790744 1332.01