Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3392 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATTCGGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCTCAATGGTGCTACATCATGTACTCGCCTCCACCACCGTCAATCGTTCTCGGTGACGGTTCAGATGACGATGATTCTTCCTCCGGCTTCCAATTCTCTCCCCTTATAGTCGCAGTGATTGGAATCTTGGCAAGTACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGAAGAGTTAACGATCAAGCAAATCATAGCAATGATGATACTGTTAATAACAATGAACCTTCTCAGGTTGCTGCGACTTCCGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACATCAAGAACGGTGGGTTGGTTGAGGGAAGTGACTGTTCCGTTTGTTTATCAGAGTTTCAAGAGAATGAGAGTTTGAGATTGTTGCCCAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCCTTGTGCCGCTCCAATATTGTTTTCTWTAATAATAACTCCAATCCWAGTCACTCTGACTCGGCATTGACACAGATTCCACATCCYCCACCGGCAACTGTCAGTGTCAATTCCTTGGAATATCAGCAGAGGAGTGATGATGTTGTTGCAATAATTGTTCAGAGTTCACAGCATCAGCAAGTAAAATGGCCCAACGTTGAAAGTGCTAATAATTTGGATCAAAGAAGATTATCCGTTGCTGACATTTTGAATCAAAATGATGAAGCTGATCCAGTAAAAAACCTACGGTACGCCGTCATCGTCACCCCGCCCAGAATGGAGACGCTATTCCATCGTTGTCCAACAACGCACCTATACCTCTCTCCTACACGTCGCATCTCCACCTCTGTTGAACTCGCGAAGCGCCGTCGCTCCCTCGCCGTGCCGGAATTTTCGCGCCGTTGCTACCTAACCGCGCTGGAGTCTTTGTCTTGTCGCATCTCTGGCCCTGCCTCCAACCCGCCGTCAGATGGTTCTTTTATATGA 1077 0.4624 MGSVSNTNPWVAPNSVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDGSDDDDSSSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRVNDQANHSNDDTVNNNEPSQVAATSGMDEAQIKSITVCKYIKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFXNNNSNPSHSDSALTQIPHPPPATVSVNSLEYQQRSDDVVAIIVQSSQHQQVKWPNVESANNLDQRRLSVADILNQNDEADPVKNLRYAVIVTPPRMETLFHRCPTTHLYLSPTRRISTSVELAKRRRSLAVPEFSRRCYLTALESLSCRISGPASNPPSDGSFI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3392 358 Pfam Ring finger domain 145 188 IPR001841 -
Amo16g3392 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 196 IPR013083 -
Amo16g3392 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 270 IPR044675 -
Amo16g3392 358 SMART ring_2 146 187 IPR001841 -
Amo16g3392 358 SUPERFAMILY RING/U-box 140 198 - -
Amo16g3392 358 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Amo16g3392 358 CDD RING-H2_PA-TM-RING 145 188 - -
Amo16g3392 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3392 Amo-Chr16 142111308 142113257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3392 1 192 C3H Transcription Factor Family AT3G03550 53.333 8.14e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3392 - - adu:107495094 489.189