Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3391 ATGGAATCACAAGAGACATCTTCAGTAGGAGCAGAAGCACTTCTACATATGTCTCCTGGATCAGCGGTTTCTGTTGCATACCACCCTCTGTTTGGACCACATGATGATCTGATCGTTCTAGAGCTTGATGATAAACTTCTTCCCGATGTTCTGCATGAAAGGGTGGTAATAAGAGGACTGCCCGATGAAGACGCAGTTCTTTGTACTCAATCCAAAACATTTGCAATGAAGTTCGTTGGAACTTCAAATTCTGTTTTGCTTATACCTCCTGCAAATCAATATGTTTTTGATCAAAATCCACAAAACGGTGCAAATAATCACAAGGAGAAGGTTGTTGCACCTGTGATTAAAGTTGTACCTGGTAATATGGAGCTTGTTGAGGTTGCTCCCAGACTTGACAAACTTAAATTGCTCCTCTCGCAGAACCCTTGCAGGCTTGAAGAGTTTGACAGTTCAGAAGTGAATCCAGAAAGTAGAGCAGGATTATATAACTGGAAGGATCTTAAAAACAATATTCAAGCTAGTGACGAGGAACTAAGATCCGGACTGCAGGCACTATCGGCTGTGGAGATTAATAGCTATTGGAGACTAGTAGACGAGAGATACATGAACACGATTCTGGAAATGGTTTTGAGAAATGCAGTGTTGAACGACTGGTCACTGAGTGCTCTTAATGAAGATGAAGTCGTAAGCATGCTGGTTTCTGATGGATTTCCTGCAGAACTTGCAAGGCATTGCTTGCACGTATATGGTGAGAAAGTAATTGACGGCACGGATACTTGTGCATGGAAGTTAGACAAGAAGCGGGTCTGCATTCATTTTGCGAGAGAAATCCTGAGAGGGGGCAAGATGAAGCTGGAGAGTTTTATGGATGAGTGGAGGCAGAGGACTCCAGATGAAATGCAGCCAACTTTTGATCTTGCCGAAGGAGAAGTTTTGACAGAGAGAATTGGAGTCGAGACATGGGTCCGCGGATTCAGRGTCTCTTCGTTGCCATCCACTCCGGCTGAACGATTCTCGATTCTTTTCAAAGAGCGGCCAAAATGGGAATGGAAAGATCTGCAGCCTTATATTAGGGATCTGAATGTGCCAGGTCTTACTTCTGAAGGTTTGCTATTGAAATATACTCGAAGAACACAACCATCACCTGAAATAGAACCAATTTTCAGTGCAAGATAG 1179 0.4317 MESQETSSVGAEALLHMSPGSAVSVAYHPLFGPHDDLIVLELDDKLLPDVLHERVVIRGLPDEDAVLCTQSKTFAMKFVGTSNSVLLIPPANQYVFDQNPQNGANNHKEKVVAPVIKVVPGNMELVEVAPRLDKLKLLLSQNPCRLEEFDSSEVNPESRAGLYNWKDLKNNIQASDEELRSGLQALSAVEINSYWRLVDERYMNTILEMVLRNAVLNDWSLSALNEDEVVSMLVSDGFPAELARHCLHVYGEKVIDGTDTCAWKLDKKRVCIHFAREILRGGKMKLESFMDEWRQRTPDEMQPTFDLAEGEVLTERIGVETWVRGFRVSSLPSTPAERFSILFKERPKWEWKDLQPYIRDLNVPGLTSEGLLLKYTRRTQPSPEIEPIFSAR* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3391 392 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 7 392 IPR019128 GO:0007064|GO:0031390
Amo16g3391 392 Pfam Sister chromatid cohesion protein Dcc1 39 358 IPR019128 GO:0007064|GO:0031390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3391 Amo-Chr16 142106312 142110766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3391 10 392 C3H Transcription Factor Family AT2G44580 55.754 4.66e-160 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3391 K11271 - gmx:100817511 592.423