Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3388 ATGAGTTGCTTTCTCTACTTCAAAGACAAATCTAGGAAATGGAAGCGTAGATCAGCACCTGAATTGAAAAAACAAGAGAAATCCAAGCTCAATGCTTTTGAAAGAGTCACAAAGTCTTCAGGATCTTCGTCCTCACCTCGTGGTATACCGGAATTGTATGAGGAGAAAGCTCATAATTTGAGGGTTTTCTCCTACGACGAGCTCCGGCACGCCACCAATGATTTCAGTAGTGTTTTTAAGATAGGAGAAGGTGGATTTGGGAGTGTATATAAAGGTTCAATCAAACCTGTCATTGCAAATGCTGATCCTGTTTCAGTTGCCATCAAAAGGCTTAACCAGAATGGTTTGCAGGGCCATAAGCAATGGTTAGCTGAAGTGCAGTTTCTTGGCGTTGTGGAGCACCAAAATCTTGTCAAACTAATAGGGTATTGTTCTGTGGATGGAGAAAGAGGAATTCAAAGACTGCTTGTATACGAATATATGTCGAATAAAAGCTTAGAATCTCATCTTTTCAATAAAGCGTATGATCCTCTTCCTTGGAAAACAAGACTTGAGATAGCACTTGGAGCAGCTCAAGGGTTAGCATATCTGCATGAAGAATCAGAAATTCAGGTGATATATCGGGATTTTAAATGCTCAAATATACTACTGGATGAAAATTTTAGGCCAAAACTTTCAGATTTTGGACTCGCTAGGGAGGGACCGGAAGCTGGACATACTCATGTTTCAACTGCTGTGATGGGAACAAATGGTTATGCTGCTCCAGATTATATTCAGACAGGCCATCTCACTACCAAGAGCGACGTGTGGAGTTTCGGCGTGGTGCTTTACGAGTTACTTACAGGAAGGCGTTCATTGGAGCGAAGCCGGCCCAAAACTGAGCAGAAACTTTTGGAATGGGTGAAACAATACCCTGCCGAGACCAAAAGGTTTGTCCTAATAATGGATCCAAGACTTGAAGGCCAGTATTCAATTCACGGAGCGCGAAAGCTTGCAAAGCTTGCAGATCATTGTCTGAGTAGAAGCGCAAAAGAACGACCGTTGATGAGTCAAGTGGTAGGGATACTGAAGCAGATAATCCAAARTTCTGATGATGAAAAATCTGCAGAGGAGYGTACTGTAATATCAGATGATGATCTAACCAAGACTGAAGAGAAGTCGACACAATCGGCTCCCTCGGAATTATGGAGAAAGAGGATGGACCATCTTGCAAAACTTGGTGAGCATGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCCTACAYAGAGGAAAAGTTCCTTAA 1284 0.4213 MSCFLYFKDKSRKWKRRSAPELKKQEKSKLNAFERVTKSSGSSSSPRGIPELYEEKAHNLRVFSYDELRHATNDFSSVFKIGEGGFGSVYKGSIKPVIANADPVSVAIKRLNQNGLQGHKQWLAEVQFLGVVEHQNLVKLIGYCSVDGERGIQRLLVYEYMSNKSLESHLFNKAYDPLPWKTRLEIALGAAQGLAYLHEESEIQVIYRDFKCSNILLDENFRPKLSDFGLAREGPEAGHTHVSTAVMGTNGYAAPDYIQTGHLTTKSDVWSFGVVLYELLTGRRSLERSRPKTEQKLLEWVKQYPAETKRFVLIMDPRLEGQYSIHGARKLAKLADHCLSRSAKERPLMSQVVGILKQIIQXSDDEKSAEEXTVISDDDLTKTEEKSTQSAPSELWRKRMDHLAKLGEHVESASRRRFMILHRGKVP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3388 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Amo16g3388 427 CDD STKc_IRAK 81 359 - -
Amo16g3388 427 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Amo16g3388 427 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3388 427 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Amo16g3388 427 PANTHER OS01G0588500 PROTEIN-RELATED 29 415 - -
Amo16g3388 427 PANTHER OS07G0495150 PROTEIN 29 415 - -
Amo16g3388 427 MobiDBLite consensus disorder prediction 367 394 - -
Amo16g3388 427 SUPERFAMILY Protein kinase-like (PK-like) 58 365 IPR011009 -
Amo16g3388 427 MobiDBLite consensus disorder prediction 30 50 - -
Amo16g3388 427 Gene3D Transferase(Phosphotransferase) domain 1 161 384 - -
Amo16g3388 427 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3388 Amo-Chr16 142075726 142079488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3388 1 399 Glycoside Hydrolase AT3G07070 42.686 2.01e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo16g3388 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3388 - - cam:101511022 644.039