Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3383 ATGGCTTCTAAACTTTACAAAGATGCCTCCAATGGTGATGAGGCAACAACAAAGCCTGTTCACTTCTTCAAGATCCTGCTCCCGAGGACCATTTTAGATGGAAAAATTATGATTCCTAGAAAGTTTGTAAGGGAATATGGAGAACGCTTGTCCAACAAAGTTGTTCTAAAGCTTCCAAATGGCACAAAATGGGAGGTATATTTGGAGAAACATGATGGAAGAATTTGGTTACAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTACGGTTTGGGGATCTATTGGTTTTTAGATTTGATGGAACATCTCATTTTAATGTGTTCATATGTGATATGAGTGCCACGGAAATAGACTACCCCTTCAAGAATAAATATGGTAAAAGGGCCAACACTAGTGATGAGGAACTTCTTCCTCGTAAAACCAAGAGAACAAATGCAAACAACAAAGATGGGGGTACTTCTAATATTCAAGACAATACCATTTCCATTTGTAAGTTGAAGAATCCAAGGGAAGGAAAGATGTCCAATGACTTGCTTTCTAAAACTAAGCCATCGGGTTTTGGAAAATTTGAAACTACAGAAGTTGCGAAAAATACTTCCTTCACGGTTATGATAAAACCAAACAGAGGATTATATCGCATGTGGTTACCGATGGGGTTCTTAAAGGATTATATCAAACCTGGGAAGCAAACTGTTACATTGTTGGTTGGAGAAAGATCTTCAAAGGTTAGGTTGATCTATTACCAAAAACATTCTACCAGTTGCCTTACAGCAGGTTGGACAAGATTTGCAAGGGAATCTGATTTGGAAATAGGTGATGCATGTTCCTTTGAATTACTAGCTAGCGATTGTGAAGACATAGTCATGAAGGTTTCCATTTTTAAGCACTCCACTACTGAGCCATAA 909 0.3817 MASKLYKDASNGDEATTKPVHFFKILLPRTILDGKIMIPRKFVREYGERLSNKVVLKLPNGTKWEVYLEKHDGRIWLQNGWKEFVEHHSLRFGDLLVFRFDGTSHFNVFICDMSATEIDYPFKNKYGKRANTSDEELLPRKTKRTNANNKDGGTSNIQDNTISICKLKNPREGKMSNDLLSKTKPSGFGKFETTEVAKNTSFTVMIKPNRGLYRMWLPMGFLKDYIKPGKQTVTLLVGERSSKVRLIYYQKHSTSCLTAGWTRFARESDLEIGDACSFELLASDCEDIVMKVSIFKHSTTEP* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3383 302 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Amo16g3383 302 Gene3D - 14 115 IPR015300 -
Amo16g3383 302 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Amo16g3383 302 CDD B3_DNA 202 296 IPR003340 GO:0003677
Amo16g3383 302 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677
Amo16g3383 302 Pfam B3 DNA binding domain 202 297 IPR003340 GO:0003677
Amo16g3383 302 SMART B3_2 201 298 IPR003340 GO:0003677
Amo16g3383 302 SMART B3_2 22 114 IPR003340 GO:0003677
Amo16g3383 302 CDD B3_DNA 21 112 IPR003340 GO:0003677
Amo16g3383 302 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 198 296 - -
Amo16g3383 302 PANTHER B3 DOMAIN-CONTAINING 16 124 - -
Amo16g3383 302 PANTHER B3 DOMAIN-CONTAINING 198 296 - -
Amo16g3383 302 SUPERFAMILY DNA-binding pseudobarrel domain 198 297 IPR015300 -
Amo16g3383 302 ProSiteProfiles B3 DNA-binding domain profile. 200 298 IPR003340 GO:0003677
Amo16g3383 302 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 16 124 - -
Amo16g3383 302 Gene3D - 189 299 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3383 Amo-Chr16 141851782 141854938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3383 22 296 B3 DNA Binding Superfamily AT3G18990 29.464 1.86e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g3383 B3 5.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3383 - - aprc:113849508 283.493