Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3373 ATGGGTGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGCCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACCCTTGCAGTCGATGCGAGCATATGGATGGTGCAATTTATGAAGGCGATGCGCGATGAGAAGGGCGAAATGGTTCGAAACGCTCACTTGCTGGGCTTCTTTCGTCGAATTTGCAAGCTCTTGTTCCTCAGGACAAAGCCAGTGTTTGTCTTCGACGGCGGAACCCCCGCCCTAAAGCGCCGCACCGTCATCGCCCGCCGCAGGCAGCGTGAGAACGCCCAGGCCAAAGTCCGCAAGACTGCAGAGAAATTACTTCTCAATCACTTAAAGGCATTGAGGTTGAAAGAAGTTGCTGATGACATTAAGAACCAGAGGCTGCAGCAGAAGAGTGATGCCAAGGGATGCAAAAAACCTGATCGGATGGACTTTGTCGATAGTGATCCAGGAAAAAGTAACATGAAAGAGATAAATGAAATGTCTTCAGCTAAACTTGCAGCTACAGAGGCAGGAAATTTCTTGCAAGAAGTTGTGTCAAGAAGTCGCAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATATCTGCAGAGGAGAATGGAATGCTAGCCGGGAAAGAAGTGCCATCTACTGTACCTAATACTTCAGAGGAGAAATTTGACACAGATGGAGAAATGATACTGCCTTGTGACAATGAAGTAGATTTAGCTGTTTTAGCTGCTTTACCAGAGTCAATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAAAAGCACCAGTGGAAGATGAACTGCAGAACCAATGTGAGGTCAATGATAGGGGCAAGGGTAAGGGGATTCTGTTCAGAGAAAGTGACTTGGGTGGTTGTAGCTCAAAATGTGACAATGTGATATCAACAAATGACAATCAAGACAAAATTGATGAAATGTTAGCAGCCTCTGTTGCTGCGGAGGGAATTGCAAAGTCTATGAGTAATGCATCAACTTTTTTTGGGGCTTCAGCCATTGAGGAAGAGGATGGTGACTATGATGAAGATGAAGAGATGATACTGCCTGCAATGCATGGTGGAGTTGATCCAGCTGTTCTGGCCTCTTTACCTCCATCAATGCAACTGGATCTCCTAGTTCAGATAAGAGAGCGATTAATTGCAGAGAATCGACAAAAGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTTTCTGAGCTACAAATAGAAGCTTACCTTAAAACAGTTGCTTTTCGACGAGAGATAGAYGAAGTGCAAAAAGCTGCTGCTGGAAGAGGAGTAGGGGGTATCCAAACTTCACGGATTGCATCTGAAGCCAACAGGGAGTACATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTGCATCAAGCAGAKCAGAGAAAAATGATGATGCTCATCGSAAGGCTCAAGGAACACATCCTGTGGAGAAYCTTGCTAATATTATTGCATCAGCTGGTTCTAATACTACAAGTGGATTGGTTTGCAATGAACCTAGTGAATCTGTTGATGAAAGAATTCAGACCTTCCTAGATGAGAGGGGTCAATTTCGAGTTAGCAGATCAAGAGCTATGGGGATGCGTATGACCCGAGATTTGCAAAGAAATTTGGACTTRATGAAGGAGATTGAGCTGGAAAGAACACAYATCAACAAGGCTTCAAATATTGATGCAATTTTGAGTGCAGAGAATAATGGTCCATCAAAAAGTTCTGGGACCAATTCTGTTGGTAAATTAAAAACTATGAATGTTGATCTAGTTGGTGAGTGTGTGCAAAATGAGCAAGTGCAAAATGAGCAATCTGTCTTTGACAAGGATACTTCTATAGAGGTATCCTTTGAATATGATAGCAAGAATGCACTCATTGATGCTGAAGATGAAATATTTGCTAATTTAGTAGGAGGAAATTCAGGGACAGTATTTCATGCTGATGGTATTCCAGCAAAAGAACAACCTTCTAATTCAGATTCAGATTGTGACTGGGAAGAAGGAATTGTTGAAGGGAAGAGTACCTTCATTCCTGGAAATAATAAAGTGGAATGGAATTCTTCTGTTGCTGAAGGGGATAATAATGATGAGAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGATAAAAGTACCATATGTTGCCCATCTGAGTCTGGGAAAAAGCCAACTCGAGGTCAATTGGAGGAGGAGTCTAATTTGCAGGAAGCAATTAGGAGAAGTCTTGAGACTATAGGAGATGGAGAGCTTAAGCACCTATCATCTGTAGATGAGCATTCAAATGCTGATGAGAAAAAATTGGATTATGGATTAACCCATGGTGATTATTTGGATGTTTCTGGTGCAATGAATTTAAATGGTGAAGATGCATTTGTGAAGATAAAAAATAGTATGGCTGTTTCATCTTCTCCTAGGGAAGATGGTTCTAAACAAAATATATTTCATGGAAATGTGGATGGCGATGGTTATGTCAACTCCCAAACTTCTGATTTTCCTAGGGGTCAGTCAAAGTCATATGTAGCATCTATTTCGAGTAACCTGGATATTTTGATTGAAAAGCCTAATGTACTGAATAGATGCTCTCATTCTGAATATTCGACTTCAGTTGCAAATATGATGAAGGACAATGACCATATGGCTGCAGAACAATTGTTGGATAAACATTGTGATGATACTAAGATGTCTTCCGATGGCAAAAATGTTTCCAAGGATAATCCACTTGGTTCCACTGAATCATCCTTGAAGGGATCAACAGAAAATGTTGATATTGGGCCAAAGTTAGCTGCAGTGGACAATGATGGAAGTTTCAGAGGAGAAAGAAATATTGATCTTGTGAAAAATGCAGTTAACACCTCAGGAGATTTTCCAGCACATGTAGATGAGGTTAGATTGGAGGAGGAAATGCGAATACTTGGTCAAGAATATATAAACCTTGAAAATGAGCAGAAGAAACTTGAAAGAAATGCAGAATCTGTGAACAGTGAATTGTTCACAGAATGTCAGGAATTACTGCAAATGTTTGGATTGCCATATATTATTGCCCCAATGGAAGCTGAGGCACAGTGTGCTTTCTTGGAAACTACAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAATGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGGGAAAAATTAGTACGCATGGCACTACTACTTGGGAGTGATTATACTGAAGGTGTAAGTGGCATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCGTTCCCTGAGAAAGATGGCTTCTTGAAATTCCGCCAGTGGGTTGAGTCACCAGATCCCACCATTCTTGGATGGTTGAATACAAAAGGTGGATCAAATACAAGAAAGAAAGGATCAAAAGAGCCTTCGTCGGATCAAATTAATAGTCATATTAAGGAACAAGAGGATTCGCTGGATTATGACCAAGAAATCAAGCAAACATTTTTTGAGAAACATAGAAATGTTAGCAAGAATTGGCATATTCCATCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTATTCTCCACAAGTTGACAAGTCAACCGAGCCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAATTACTATTACCTGTTTTAAAGGAATATAACAAACACGAGACTCAACTGCGTTTGGAAGCGTTTTATAGTTTCAATGAACGATTTGCAAAAATTCGAAGCAAGAGAATTAAGAAAGCTGTAAAAGGGATTACTGGTAAGCAGCCTTCAGAATTGAAAGATGATTTCAACAGTGGCAAGAGTAGGAGAGGAAATCATCTAGAATCTGAGGACAAAAATTTTGAGAATCTAAAGGGGACAAAGGAAAGTCTTGAAAGTTTGAAGAAACCTAAAGTGAAACAATCAAGGAAAAGGAAGAATGACGGGGACACTCTTGGGAAGGCAATGTCAAAGAGAAAGACAATCACTGATGGTCCTTCAGCTTCTGCTATGTCTGCAGTGGAGAATATACAGCCAGGTACTGAGTCTGAAAAAGACCAAAGTGATAGTAATCCATTGATTTCAAATAGAAGTGGGAGGGGCAGAGGAAGAGGCAGAAGTTTGGCAGTAAAACATGGAAGGAAAAAGGAAAGTCTCATTTATCAATCATCTGRAACRTCATCTTCYAGTAGYGACACTGATGATCATGTTGATATGTCAAAAGTTCCTCAAGAGGTTCGAAGGTCCTCACGTTCCAGAAAACCTGTCAGTTATTCACTTGAGAACCTAGAAGATGAAGAACTCAATGAGTCATTTGATACGAGGAATCAATCATCCTTGTGTGAAGATCCATTAGAAGAAAATTTATCTGATATTCCTGGTGCATGTGGGGATTCTGCAACTGGTTTAAGCAGAGGTAAAGAGAGTGATATGATAAGTAGTGCTCCAACCAGGAACTTCCCTAGAGACGATCTTGGGTWGGAAGGTCAASTTTTCACRGATGCTGATGAAACTACTCATCCAGATCCAGGAATTGGTGATGGTGATATTACTGTTAATGCTGACTCTTGTGATGACTACCTTAAACTAGGAGGTGGTTTTTGTTTAGATGATAGTGATGAACCTAGCAATCAGAATGCAGTTGATGGTGTCAATACTGCTGATACTGAAGGATTTCTGCACTGTTCTGTTATGATGGATGAGACTGACCATCATAAAAATGGTTCTGAGATATTATTTTCTGGCACCGATAAAGCTCCCAGCGAGATGCAAGAGGGACGCAATGCCTACAATGTTGACAACGAGCCAAATGATAACCTTCCAAATGTTAGTGCCAATGATCAAAATGAAATGGGGGTCTCTGTACCTGAGAATGTTAATCATAATAATGGAAACTACAATGGGGCATTTAGTGCAATGCCATTTTTGAGGAAAAGAAGGAAGAAGTAG 5046 0.4061 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKEVADDIKNQRLQQKSDAKGCKKPDRMDFVDSDPGKSNMKEINEMSSAKLAATEAGNFLQEVVSRSRNQEELDEMLAASISAEENGMLAGKEVPSTVPNTSEEKFDTDGEMILPCDNEVDLAVLAALPESMQLDILAQLKGKKTKAPVEDELQNQCEVNDRGKGKGILFRESDLGGCSSKCDNVISTNDNQDKIDEMLAASVAAEGIAKSMSNASTFFGASAIEEEDGDYDEDEEMILPAMHGGVDPAVLASLPPSMQLDLLVQIRERLIAENRQKYQKVKKDPAKFSELQIEAYLKTVAFRREIDEVQKAAAGRGVGGIQTSRIASEANREYIFSSSFTGDKQELASSRXEKNDDAHRKAQGTHPVENLANIIASAGSNTTSGLVCNEPSESVDERIQTFLDERGQFRVSRSRAMGMRMTRDLQRNLDLMKEIELERTHINKASNIDAILSAENNGPSKSSGTNSVGKLKTMNVDLVGECVQNEQVQNEQSVFDKDTSIEVSFEYDSKNALIDAEDEIFANLVGGNSGTVFHADGIPAKEQPSNSDSDCDWEEGIVEGKSTFIPGNNKVEWNSSVAEGDNNDESEVEWEEGDCDGDKSTICCPSESGKKPTRGQLEEESNLQEAIRRSLETIGDGELKHLSSVDEHSNADEKKLDYGLTHGDYLDVSGAMNLNGEDAFVKIKNSMAVSSSPREDGSKQNIFHGNVDGDGYVNSQTSDFPRGQSKSYVASISSNLDILIEKPNVLNRCSHSEYSTSVANMMKDNDHMAAEQLLDKHCDDTKMSSDGKNVSKDNPLGSTESSLKGSTENVDIGPKLAAVDNDGSFRGERNIDLVKNAVNTSGDFPAHVDEVRLEEEMRILGQEYINLENEQKKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAFLETTKLVDGVITDDSDVLLFGARNVYKNIFDDRKYVETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEKDGFLKFRQWVESPDPTILGWLNTKGGSNTRKKGSKEPSSDQINSHIKEQEDSLDYDQEIKQTFFEKHRNVSKNWHIPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSELKDDFNSGKSRRGNHLESEDKNFENLKGTKESLESLKKPKVKQSRKRKNDGDTLGKAMSKRKTITDGPSASAMSAVENIQPGTESEKDQSDSNPLISNRSGRGRGRGRSLAVKHGRKKESLIYQSSXTSSSSSDTDDHVDMSKVPQEVRRSSRSRKPVSYSLENLEDEELNESFDTRNQSSLCEDPLEENLSDIPGACGDSATGLSRGKESDMISSAPTRNFPRDDLGXEGQXFTDADETTHPDPGIGDGDITVNADSCDDYLKLGGGFCLDDSDEPSNQNAVDGVNTADTEGFLHCSVMMDETDHHKNGSEILFSGTDKAPSEMQEGRNAYNVDNEPNDNLPNVSANDQNEMGVSVPENVNHNNGNYNGAFSAMPFLRKRRKK* 1682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3373 1681 MobiDBLite consensus disorder prediction 809 838 - -
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1433 1460 - -
Amo16g3373 1681 CDD H3TH_XPG 1084 1215 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 133 157 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 730 748 - -
Amo16g3373 1681 Pfam Ubiquitin binding region 363 387 IPR025527 -
Amo16g3373 1681 Pfam Ubiquitin binding region 235 257 IPR025527 -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1148 1166 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1299 1356 - -
Amo16g3373 1681 Gene3D - 1081 1135 - -
Amo16g3373 1681 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1418 1432 - -
Amo16g3373 1681 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 287 1681 - -
Amo16g3373 1681 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 263 - -
Amo16g3373 1681 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 263 - -
Amo16g3373 1681 CDD PIN_XPG_RAD2 998 1082 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1361 1396 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1626 1665 - -
Amo16g3373 1681 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 287 1681 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1289 1550 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1606 1665 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 680 748 - -
Amo16g3373 1681 Gene3D - 964 1080 - -
Amo16g3373 1681 SMART xpgineu 1012 1081 IPR006086 GO:0004518
Amo16g3373 1681 Coils Coil 968 1002 - -
Amo16g3373 1681 ProSitePatterns XPG protein signature 2. 1015 1029 IPR019974 GO:0016788
Amo16g3373 1681 MobiDBLite consensus disorder prediction 906 926 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 685 699 - -
Amo16g3373 1681 Coils Coil 1313 1333 - -
Amo16g3373 1681 SMART HhH_4 1083 1116 IPR008918 GO:0003677|GO:0003824
Amo16g3373 1681 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Amo16g3373 1681 MobiDBLite consensus disorder prediction 1140 1166 - -
Amo16g3373 1681 Gene3D - 1 142 - -
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Amo16g3373 1681 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 651 668 IPR006084 -
Amo16g3373 1681 Pfam XPG I-region 1015 1096 IPR006086 GO:0004518
Amo16g3373 1681 MobiDBLite consensus disorder prediction 897 927 - -
Amo16g3373 1681 MobiDBLite consensus disorder prediction 133 158 - -
Amo16g3373 1681 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1081 1277 IPR036279 -
Amo16g3373 1681 SUPERFAMILY PIN domain-like 2 1096 IPR029060 -
Amo16g3373 1681 SMART xpgn3 1 98 IPR006085 GO:0004518
Amo16g3373 1681 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3373 Amo-Chr16 141645464 141657873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3373 1006 1113 Core DNA Replication Machinery Family AT5G26680 35.135 1.83e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3373 K10846 - gmx:100820295 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3373 16 141645464 141657873 Amo16g3373 16 141645464 141657873 ECH
Amo16g3373 16 141645464 141657873 Amo06g2757 06 92255653 92267314 hybridization