Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3356 ATGCTTATAGAACGGATGCAGGGTGAAAGAGATAAATGGCTTGCTGCGATCAACACATCCTTTGGTCATATTGAAGATTCTTTAATCCTGAATAGTCCAAAAATTTTTCTAATTTTGTTGTGGCAGGTAGCAATGGCAGCTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAAAGTATAAGGGGGATACAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGAGGACCTACTCGTTGAGGGCAACGTGTACGTAGTCAATAATTTTGTAGTTACTTTGACTACCATCAAGTTTAAGCCTACTAGACACGAATTTAGAATCAACTTCAAGAGGGGCACGATTGTGCGTCCGGTACAAGACTCTTCAGTTCCATTGAACGGATTCAATTTTGTTCCGTTAAAAAAAATTCATGCAGAGTCTAAAAAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGTGTAACTTGGTCGAGTTCACACGGGACGGGAAGCCGTCAAGTTATATCACGATAGAACTTGATGATCTTGAGGTAACGTTGTGGCAGAATTTTGCTTTTAACTTGCTCAAATATTTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGAGTAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAATATAAACTACAATTCGAAACTGTTTATCAATGTTGAATTTCCAGCTGCCAGAAATTTCTTTGCAAGGGTGAACAAATTGGATTCTGTTGACGAACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAATTGAGAAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTACCGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACTGCCACGACGATTAAGGAAGTTGAGACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGAAACTTGAGAAAAGATATTTCTGTCCTAATTGCGTTGAAGACTACGGGTTCTATGTGCCAATGTATGACTCACGATACTTCTTTAACATTGACACATTACATACTCTTTGTCTAAGAAAATAA 1098 0.388 MLIERMQGERDKWLAAINTSFGHIEDSLILNSPKIFLILLWQVAMAARYDLIKCINAGPKYKGDTIQCSIKGIFVPIFEDLLVEGNVYVVNNFVVTLTTIKFKPTRHEFRINFKRGTIVRPVQDSSVPLNGFNFVPLKKIHAESKKDGYLVDVIGQLASKCNLVEFTRDGKPSSYITIELDDLEVTLWQNFAFNLLKYLEEHPCLTYVVILQMSKMKFYSGVMGVSNINYNSKLFINVEFPAARNFFARVNKLDSVDEQGIMPLVCDQPVSIEKDFLRLSVYKTITEIKEHNQDAVFVTATTIKEVETEFGWWYKGCKKCRRGLRKLEKRYFCPNCVEDYGFYVPMYDSRYFFNIDTLHTLCLRK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3356 365 Gene3D - 60 125 IPR012340 -
Amo16g3356 365 PANTHER REPLICATION FACTOR A 1, RFA1 76 337 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo16g3356 365 SUPERFAMILY Nucleic acid-binding proteins 132 250 IPR012340 -
Amo16g3356 365 Gene3D - 277 357 IPR012340 -
Amo16g3356 365 SUPERFAMILY Nucleic acid-binding proteins 63 124 IPR012340 -
Amo16g3356 365 Gene3D - 126 257 IPR012340 -
Amo16g3356 365 Pfam Domain of unknown function DUF223 61 146 IPR003871 -
Amo16g3356 365 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 76 337 - -
Amo16g3356 365 SUPERFAMILY Nucleic acid-binding proteins 282 341 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3356 Amo-Chr16 141411897 141414732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3356 61 339 Core DNA Replication Machinery Family AT2G06510 26.115 2.09e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3356 - - adu:107477146 503.827