Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3353 ATGGCTACTGCATCAACTACCCCATCATCAGTTCCAGCAATGCCGTCTCACATGAAAGCCTGGGCCTATACAGAACATGGGAAGACAACAACAGTTCTGAAGTTAAATCCAAATTTTCCTGTTCCTGAACCCAAGTCGAACCAGGTACTAATAAAGGTTGTTGCTGCAGCCATTAATCCCATAGATTATGTCAAGATTGAGGGACGTATGGTGTATGAGGATGCTGAACAAGTTCCATTTCCGATTGTTCCTGGCTATGATGTTGCCGGTGTGGTGGTGAAAGTAGGAAGTGGAGTGAAGAAGTTCAAAGAAGGGGATGAAGTGTATGGTATGGTGGAGGCAAAAGATGTTGGGTCTTTGGCTGAATACACAACTGCACAAGAGAATGGTTTGGATCACAAGCCTCCAAATTTGGGCTTCGCTGAAGCTGCTGCCATTCCTTTAGCAATTCAAACTGCTTATGGAGCTCTTCACAAGGTTGGCCTTTCTGCCGGCCAATCTATTCTTGTTTTGGGAGCTTCTGGCGGCGTTGGATCCTTTGTTGTTCAGAACCAAAAATCCATAAATATAATTATCAAAACAAACGACGAGACGAGGTGCGACGGGGAGGAGGAGGTGCGGCGAGACGACAACGAGGGCGAGGAGGCGATGACGAGGGCTAGGCGACAACGTCGGCAAGGGCGAGGAGGAGGAGCAGAAACAGGTCGCAGCGCACGAGCTGATGACATGGTAGAATTTGACTTGACTTACCCATCGTATATTTGGCAAAGACAGGTTGCGAAACATGTTTTTGGTGCTTCCGTGGTGGCAGCTACAGCTAGCACTGGAAAACTGGAATTGCTGAAGAAGTTAGGAGTTGACATGCTAATTGATTATACAAAACAGAACTTTGAAGATCTTCCTGAAAAGTTCGATGTAGTCTATGATGCCGTAGGGCAGAGTGAAAGGGCATCGAAGGCTATGAAAGAAGGTGGCAAAATTGTAACAATAGTACCTCCTGGAGTTTCACCAGCAATGGTGTTCATACTCATTCCTGATGATGGAACAATGTTGCAAAAGCTAAGACCGTACTTGGAGAGTGGCAAGGTGGTGCCAGTACTTGACCCCAAGACTCCATTTCCATTTTCTCATACTGTTGAAGCACTCTCTTATTTGCAAACTCGTAGAGCAACGGGAAAAGTAGTCATTCATCCCATCCCTTGA 1203 0.4622 MATASTTPSSVPAMPSHMKAWAYTEHGKTTTVLKLNPNFPVPEPKSNQVLIKVVAAAINPIDYVKIEGRMVYEDAEQVPFPIVPGYDVAGVVVKVGSGVKKFKEGDEVYGMVEAKDVGSLAEYTTAQENGLDHKPPNLGFAEAAAIPLAIQTAYGALHKVGLSAGQSILVLGASGGVGSFVVQNQKSINIIIKTNDETRCDGEEEVRRDDNEGEEAMTRARRQRRQGRGGGAETGRSARADDMVEFDLTYPSYIWQRQVAKHVFGASVVAATASTGKLELLKKLGVDMLIDYTKQNFEDLPEKFDVVYDAVGQSERASKAMKEGGKIVTIVPPGVSPAMVFILIPDDGTMLQKLRPYLESGKVVPVLDPKTPFPFSHTVEALSYLQTRRATGKVVIHPIP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3353 400 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 165 186 IPR002364 GO:0008270|GO:0016491
Amo16g3353 400 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 11 188 IPR044626 GO:0016628
Amo16g3353 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 258 365 IPR036291 -
Amo16g3353 400 CDD MDR_like_2 18 396 - -
Amo16g3353 400 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 11 188 - -
Amo16g3353 400 MobiDBLite consensus disorder prediction 199 238 - -
Amo16g3353 400 Gene3D - 146 187 - -
Amo16g3353 400 Gene3D - 258 366 - -
Amo16g3353 400 Pfam Zinc-binding dehydrogenase 284 396 - -
Amo16g3353 400 SUPERFAMILY GroES-like 15 172 IPR011032 -
Amo16g3353 400 SMART PKS_ER_names_mod 28 396 IPR020843 GO:0016491
Amo16g3353 400 Gene3D - 367 396 - -
Amo16g3353 400 Gene3D - 27 145 - -
Amo16g3353 400 Pfam Alcohol dehydrogenase GroES-like domain 47 113 IPR013154 -
Amo16g3353 400 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 258 400 IPR044626 GO:0016628
Amo16g3353 400 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 258 400 - -
Amo16g3353 400 MobiDBLite consensus disorder prediction 199 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3353 Amo-Chr16 141323225 141330099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3353 35 108 Monolignol Biosynthesis Gene Families AT2G21890 33.333 6.04e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3353 K18980 - psom:113282405 214.542