Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3352 ATGGATTATTCCAGAATTATTGAGTCTTCAGAAACTCACAGGAATAAGTGTGCGGCATGCTTCAGACAGTTCAACAAACTGGAGCACTTGGTGGAGCACATGAGAATCTCATACCATTCGGGTCATGAACCAACTTGTGCCATTTGCAGAAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACACCTTATAGGTCCGTTGCCGAAACAGGAATGCCGGGATATATTTGCATACCGAGGGTGCAAGTTTTGCTTGAAGGTGTTTGACAGCCCTAACTCGCGCAGGGTCCACCAAGAAAAATGCCAACTCTCTGGACTAACTGGAATGATTGGTCGGTTTTCTAGCATGGGTCTTCGAGATAATTTGACAATTGGATCAAGAGGAGCACAAGTAGTTGCACTTGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGCTCACTTGATCTTTGTGCAAGAGTTTGCATAATTGATGAGCATMAGAACATCATCTTCCATTCTTATGTCAAACCAGCATTTCCAGTCACTAATTATAGGTACGAGACAACAGGTATTAGAGCAGAATATTTGAGGGATGCAATACCAATGAGGCAAGTTCAGAGGAAGATTCAAGACTTCCTTTGCAATGGAGAGCCCATGTGGACAATTAGAGCAAGAGGTGGCAAAGCCAGGATTCTTGTTGGTCATGGTTTGGATCATGACCTAGAATGTCTCCAAATAGAATATCGACCAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACAAGCAAGTTGAGCAACTCACTTAAATACTTAACACAAACATATCTAGGGTATGACATTCAAACTGGGATACAGGATCCTTATGATGATTGTGTTGCAACAATGAGACTCTACAAGAGAATGAGGTCCCAGGCACATAGAATGGAGGATTACCCTTTGGCATCTGACCCTCAGAACAGAAACAATTTTGCTTCTTGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTTGAAATTTCAAGGTCTGATTACTATTGCTGGTGCATGGATTCCTTATATACCTCATGA 1068 0.4232 MDYSRIIESSETHRNKCAACFRQFNKLEHLVEHMRISYHSGHEPTCAICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRVHQEKCQLSGLTGMIGRFSSMGLRDNLTIGSRGAQVVALACKMVGGGSDGSLDLCARVCIIDEHXNIIFHSYVKPAFPVTNYRYETTGIRAEYLRDAIPMRQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQIEYRPEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVATMRLYKRMRSQAHRMEDYPLASDPQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCMDSLYTS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3352 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Amo16g3352 355 Gene3D - 127 313 IPR036397 GO:0003676
Amo16g3352 355 PANTHER OS02G0709000 PROTEIN 8 351 - -
Amo16g3352 355 Pfam Exonuclease 149 295 IPR013520 -
Amo16g3352 355 SMART exoiiiendus 130 304 IPR013520 -
Amo16g3352 355 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Amo16g3352 355 SUPERFAMILY Ribonuclease H-like 144 300 IPR012337 -
Amo16g3352 355 CDD REX4_like 132 296 IPR037431 GO:0006364|GO:0008408
Amo16g3352 355 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 8 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3352 Amo-Chr16 141310896 141313943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3352 1 352 C2H2 Transcription Factor Family AT3G27970 74.438 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3352 - - gmx:100813973 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3352 16 141310896 141313943 Amo16g3352 16 141310896 141313943 ECH