Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3351 ATGCTCCTACTCCGATTCACCACCAATCCTCATCCTCCACCGCCATTTCTACCCTGCATCACCAACGCCACATCTTCTTCCTTTTGCCCCACGCATCGCTCTTTGTTCAACAACGGAAACAAGAACTGCTTTGTTCGCTCGAATGTCAGGACCCACACTCTTCGTGTTTTCGCAATGTCTGATTCCAAGGCATACAAGATGAACCTCAACCAGTACCTTGTCACTCTCGAAAGGCCCCTCGGCATCCGTTTCGCTCTCACCGCTGACGGCAACATCATCGTCCATTCCCTCACCAAAGGGGGCAATGCAGAGAGGTCGAGGATTATAATGGTAGGTGACACTTTGAAGAAACTTGGGGACTCATCTCAGAACAAGCTCGTCGAGATTAAAGACGTTGGAGACACACAGAAGGTGCTAAATGAGCAAGCAAATTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCACCTTTTCCGATCCAACTACTGCATAAAATGATTGATCTTGAAATATTGTTTAATAGAGGTCGAGTTCCTATTATCTCCTGGAGCAAGACACTATTGGCATCTAATTTACAGCCATCTAGTGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCAAAATTTCTTACATTGAAAGGAAGCCAGCTATTGGGCAATCAAAATCAAGATGCCATCACTTATGGCGAAAGAAACTTCATTACTCAACAAACGACTCAACTTGCTTGTATTTTTACTGGAGAAGCCTGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCTCTGGACCGTTCCAAGGATGAGATGTACTATAATCATTCCCTTGGCATGCGCTATAGTAAGATTACAGAGCAACTATTTGTAGGATCATGTATTCAAACAGAAGCTGATGTGGAAACTTTGTCAAATGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAAATGAAGCTGAAAATTGGGGAATAAATGTAAGATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATTCCATAAGGGATAGAGATTCATATGATTTGAGAAAGAAACTTCCATTTTGTGTGGGGCTACTATTAAGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGTAGACCCGACAGGCCAGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGAAGATGATGTAACTTTGGTGGGAGATTTTACTGCAAACTGGAAAGAACCACTAAAGGCAGTGTATCAGGGTGCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTTATTGTTAATGGAGAATGGATGCATTCAACTGCTTCACCAGAAGAAAGCGATGATAGGGGTAATATTAACAATATAATTGTCATCGGTGAAACTGCCAGCATTCAGCCTTCGGTTCAGCACCAGCAGGAGTTCCAGGATGCAAATGTTGTGAAGGTAATTGAAAGGCCTTTGAATGAAACAGAGCGGTTTATGCTTGCGAAAGCAGCTCGTTGTATCGCATTCTCTATCTGTCCTATCAGATTAACTCCCAAGTAA 1764 0.4297 MLLLRFTTNPHPPPPFLPCITNATSSSFCPTHRSLFNNGNKNCFVRSNVRTHTLRVFAMSDSKAYKMNLNQYLVTLERPLGIRFALTADGNIIVHSLTKGGNAERSRIIMVGDTLKKLGDSSQNKLVEIKDVGDTQKVLNEQANSFSLVLERPTSPFPIQLLHKMIDLEILFNRGRVPIISWSKTLLASNLQPSSESSGNSGFVVFNSKFLTLKGSQLLGNQNQDAITYGERNFITQQTTQLACIFTGEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQLFVGSCIQTEADVETLSNVEGITAVLNFQSGNEAENWGINVRSINDSCQRNNILMINYSIRDRDSYDLRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEEDDVTLVGDFTANWKEPLKAVYQGARHEVEVKLPQGKYYYKFIVNGEWMHSTASPEESDDRGNINNIIVIGETASIQPSVQHQQEFQDANVVKVIERPLNETERFMLAKAARCIAFSICPIRLTPK* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3351 587 Pfam Dual specificity phosphatase, catalytic domain 307 416 IPR000340 GO:0008138|GO:0016311
Amo16g3351 587 ProSiteProfiles PDZ domain profile. 73 154 IPR001478 GO:0005515
Amo16g3351 587 Pfam Glycogen recognition site of AMP-activated protein kinase 453 534 IPR032640 -
Amo16g3351 587 SUPERFAMILY E set domains 450 532 IPR014756 -
Amo16g3351 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 276 419 IPR029021 -
Amo16g3351 587 CDD E_set_AMPKbeta_like_N 453 531 - -
Amo16g3351 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 44 586 - -
Amo16g3351 587 Gene3D Immunoglobulins 440 535 IPR013783 -
Amo16g3351 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 286 448 IPR020422 GO:0006470|GO:0008138
Amo16g3351 587 SUPERFAMILY PDZ domain-like 73 166 IPR036034 GO:0005515
Amo16g3351 587 Gene3D Protein tyrosine phosphatase superfamily 279 553 IPR029021 -
Amo16g3351 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 44 586 IPR030066 GO:0005983
Amo16g3351 587 CDD DSP_laforin-like 285 431 IPR045204 GO:0019203|GO:0046838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3351 Amo-Chr16 141291799 141298457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3351 138 587 Protein tyrosine phosphatase (PTP) family AT3G01510 66.297 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3351 - - adu:107495061 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3351 16 141291799 141298457 Amo16g3351 16 141291799 141298457 ECH