Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3325 ATGCCTCCGATCCAAGAAACCGACCCGATACAAGATACAACCATCGCCGACCACCAGAAGAAAACCAACAACAAGAGGATGGCCAAGGACGCCGGTGGCGGCGGCGGCGGCTCTGCCGCGGGACCAATGAGGTACCGCGGCGTCAGGCGGAGGCCGTGGGGGTGTTACGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCTGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCTTGCGCCTACGACTGTGCTGCCAGAGCGATGCGAGGCGCGAAGGCGAGGATGAACTTCATGTATCCTGATTCTCCTCCTCATCCTCATCCACACCATCACCATCATAATTTTCGTCACTCTGAACTGTTCCAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAGCGGCCGCCATGGCGTAACTGCTCCATTATCGACTCAGCAGCAGCACCGAAACATCACTAACAATTCTCATCATTCCCTGAACATGCTTCTATTCCGCGAGTTTCTGAATTCAAATCTATGTTTGGTTTCTTCTTCTTCTGCTGCTACTGGTGGTGTTGGTTCTAGTGGTGCTAATAATAGTCCTTATCAGTACTGCATCAAGGAAGGTGGTTCCGCTTGCTGCTTCAACGGTAACTGTTGCGGTGGTGGTTCCAACAACGGCACGACGGAGGTTATTGCTGAAGGTGTTGAGGAAGAAGATCAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAGACTTTGGCCTGTTGGAAGAGATAGTTCAACGCTTCTTGCCGAAATCCAAAATCGTTCCAAACAAGAATTGCGACAGCTCTTTGAAGCTGAAACCCGAGGCCGCGGCAATTTCGTTTCCTCATCATCAACAACAACAACAGGGCTATGATGATAACAGCAGGATGATGAGGGGCTGA 939 0.525 MPPIQETDPIQDTTIADHQKKTNNKRMAKDAGGGGGGSAAGPMRYRGVRRRPWGCYAAEIRDPQSKERLWLGTFDTAEEAACAYDCAARAMRGAKARMNFMYPDSPPHPHPHHHHHNFRHSELFQAFNFPKQQCHVSKLVQSGRHGVTAPLSTQQQHRNITNNSHHSLNMLLFREFLNSNLCLVSSSSAATGGVGSSGANNSPYQYCIKEGGSACCFNGNCCGGGSNNGTTEVIAEGVEEEDQSLLELFPRESSDFGLLEEIVQRFLPKSKIVPNKNCDSSLKLKPEAAAISFPHHQQQQQGYDDNSRMMRG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3325 312 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Amo16g3325 312 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 290 - -
Amo16g3325 312 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Amo16g3325 312 MobiDBLite consensus disorder prediction 13 27 - -
Amo16g3325 312 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Amo16g3325 312 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Amo16g3325 312 MobiDBLite consensus disorder prediction 293 312 - -
Amo16g3325 312 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Amo16g3325 312 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Amo16g3325 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 13 290 - -
Amo16g3325 312 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Amo16g3325 312 MobiDBLite consensus disorder prediction 1 45 - -
Amo16g3325 312 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3325 Amo-Chr16 140265049 140266578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3325 23 271 AP2-EREBP Transcription Factor Family AT1G12980 37.751 6.93e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g3325 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3325 - - ahf:112736058 515.768