Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3308 ATGGGGAAGCCGAAGCATGTCGCTCCTCCCGAAGACTCTGACGACGAATCGCAGGTTCCAAAGCCTCAGCTCGAACAAGAAGATAGCAGCGAGGAAGAGGATGAAGCAACTTCATCTGAGGAAGACGAAGACACCGATGAAGGCGAAGATGAACGTGACAAGCACGTGCTGCTTCCCAGGAAGCCTCAACCGCAAGTGGTTTCCAAACCCTCGTCTTCTTCTTCTGAAGACGATTCGGAGTCGGAGCCAGAGCCAGAGCCGGAACCGGAGCCGGAGCCTGAGCCCGAGCCCGAGGCTCTATTGAAAAACGCGAAACCCTCTTCAAAGTTGAAGTCTCCACCTTCGTCTGCTGTGAGTCAAGCCAAATCCGGGTCGAAGCGCGCAGCGAAGAACAGTATCGATCACTCGAACCAAACAAAACGTGGGAAGAAGGCACAGGAGGATCACGCGGCCTCTGATGAAGAGGATCCGAAGAAATCACGTGACGAGTCCAAATCCCTCTTTCAGAGGGTTTTCAGCGAGAAAGATGAGATAGGTATCTTGAAAGGCCTGGCTGAGTTCAACGCAAAAACAGGGAAGGAACCCTATAAATGCGCTGAAGAATTTTACGATTTTTTGAAGGGATCGAATTTGATTGGGTCAAATGCATCATGCAACCAATTGAAGGATAAGATCCACCGGCTGAAGAAGAAGTTTGAGAACAACCTAGCCAAAGAGAAGAACGGCAAGGGGACAACTTTAAAGCCGCACGAGTTGGAAGCATTTCAGTTGGGAAAGAATGTTTGGGGCCACGATGGCCGTGGCGGTAAAACGGTGCGCAACGAAGCTTCGAAAAAGGATAAGGCTGGGAAGAGTACCCCCAAGAAGGCGCCAGTGCCCCATTCAAATGAGAAAGCTGAAGCAAAGTCCAAAATGAAATCTGAACCTTTGGATTCAAGGATGAGTGAATTGTCTGGGACTAGTTTAGCTTTGACTTCAATGTTGAAATACGATGGGACTTTTGGTAAGCCTTACGGTGAAGACTATATTAGAAGGGGAATAGAGTTGCTTGGAGTCTCAAAGAGGGAAGAGATCGAGGATAAGTGGAGAAAGTTCGAAGATGCTGAAAATAAATTGTATGCGGAGATAGCTGAATTCTATGCGGAACAGGCTAAGTTACTATGTCAAGCAAATAGCTCCTCGTCCTCCTAG 1191 0.4845 MGKPKHVAPPEDSDDESQVPKPQLEQEDSSEEEDEATSSEEDEDTDEGEDERDKHVLLPRKPQPQVVSKPSSSSSEDDSESEPEPEPEPEPEPEPEPEALLKNAKPSSKLKSPPSSAVSQAKSGSKRAAKNSIDHSNQTKRGKKAQEDHAASDEEDPKKSRDESKSLFQRVFSEKDEIGILKGLAEFNAKTGKEPYKCAEEFYDFLKGSNLIGSNASCNQLKDKIHRLKKKFENNLAKEKNGKGTTLKPHELEAFQLGKNVWGHDGRGGKTVRNEASKKDKAGKSTPKKAPVPHSNEKAEAKSKMKSEPLDSRMSELSGTSLALTSMLKYDGTFGKPYGEDYIRRGIELLGVSKREEIEDKWRKFEDAENKLYAEIAEFYAEQAKLLCQANSSSSS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3308 396 MobiDBLite consensus disorder prediction 266 311 - -
Amo16g3308 396 PANTHER STOREKEEPER PROTEIN 14 391 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 133 169 - -
Amo16g3308 396 Coils Coil 218 238 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 1 169 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 1 26 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 258 316 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 27 49 - -
Amo16g3308 396 MobiDBLite consensus disorder prediction 77 94 - -
Amo16g3308 396 Pfam Protein of unknown function, DUF573 168 263 IPR007592 GO:0006355
Amo16g3308 396 PANTHER BNAANNG10740D PROTEIN-RELATED 14 391 IPR007592 GO:0006355
Amo16g3308 396 MobiDBLite consensus disorder prediction 108 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3308 Amo-Chr16 139777621 139780559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3308 68 266 GeBP Transcription Factor Family AT1G61730 36.893 4.34e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Amo16g3308 DUF573 5.2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3308 - - adu:107494693 566.614