Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3307 ATGATGAAGAAGTGCGAACTGTGCAAGGTTAGGGCTAGGACTTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGACCTGCGACGCTAATGTTCACGGTGCTAACTTCCTTGTGGCTAGGCACTCCAGGACGCTCCTCTGCCGCGACTGTTACTCACTTACGCCGTGGAAAGCCACCGGCGCCGCACTCCTTAACGCCGTTTCCCTCTGCCACAGTTGTTCCAAGGGAGAACAAGAAAAACCAAAAGAAGAAGAGAGCGAAGGGGAAAATAACGACGCGACAGAAATCGACGACGACGACGACGACGGTTTCGAAGATGTGGACGGAGAAAATCAGGTTGTGCCTTGGTGCTCTTCCACCACCCCGCCGCCTCCGCCTTCGAGTTCCGCCGGCAGCGAAGAGTCGGAGTTCGGCGCTGGAGATGGTTTTGACCTGGCGACGTCGTTGAAACGACGGCGTGACGTCGACGCTTCGGATCGTGACCTTCAGGAAGCCTCGAACGCTTCGATTTGTGAGCGGCGGAGGATGGCAGAGGACCACCGCTGA 546 0.5714 MMKKCELCKVRARTFCESDQASLCWTCDANVHGANFLVARHSRTLLCRDCYSLTPWKATGAALLNAVSLCHSCSKGEQEKPKEEESEGENNDATEIDDDDDDGFEDVDGENQVVPWCSSTTPPPPPSSSAGSEESEFGAGDGFDLATSLKRRRDVDASDRDLQEASNASICERRRMAEDHR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3307 181 MobiDBLite consensus disorder prediction 77 181 - -
Amo16g3307 181 CDD Bbox1_BBX-like 4 46 - -
Amo16g3307 181 PANTHER - 2 177 - -
Amo16g3307 181 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Amo16g3307 181 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Amo16g3307 181 SMART bboxneu5 1 46 IPR000315 GO:0008270
Amo16g3307 181 MobiDBLite consensus disorder prediction 146 181 - -
Amo16g3307 181 MobiDBLite consensus disorder prediction 88 108 - -
Amo16g3307 181 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3307 Amo-Chr16 139729132 139730532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3307 1 124 C2C2-CO-like Transcription Factor Family AT4G27310 40.854 1.06e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3307 zf-B_box 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3307 - - gmx:100809520 155.992