Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3293 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAARGAAGTTCCTGAGCCTGTGTATTTACAGTTTATGGCTTTAAAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGAAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTWCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAAAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAAAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTAGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGCCATACCATGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATGCAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGATACCAGCTCAATATTCAACAAGTTCGTTGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCAAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGAGCTGACTGCAATTTTGCACCGTGCGTACGATAACATCATGGCCGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCATTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATCGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGCGGTGCATTCAAATTCTAGCCAATATCAAGGACACGTTATGAATTATCAGTTCAGGATACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1233 0.4323 MDHSTSDCQLNPGEVDYEFESKEVPEPVYLQFMALKPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRXTNRKGNEIKNQLITCSKEGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMEQAERESDAADFHTAIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQDTSSIFNKFVVTYDSVAAEVKCQCLLFKSRGILCRHALSVLSFEQVSQVSPRYILERWSKKELTAILHRAYDNIMAEMESLKAKRKGTSSLSHEDANLESINELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLFDAASAVHSNSSQYQGHVMNYQFRIPAAGDNSLGV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3293 410 MobiDBLite consensus disorder prediction 338 358 - -
Amo16g3293 410 Pfam FAR1 DNA-binding domain 61 146 IPR004330 -
Amo16g3293 410 SMART 26again6 250 277 IPR006564 GO:0008270
Amo16g3293 410 ProSiteProfiles Zinc finger SWIM-type profile. 239 275 IPR007527 GO:0008270
Amo16g3293 410 PANTHER OS03G0843700 PROTEIN 163 363 - -
Amo16g3293 410 PANTHER OS03G0843700 PROTEIN 39 158 - -
Amo16g3293 410 Pfam SWIM zinc finger 241 272 IPR007527 GO:0008270
Amo16g3293 410 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 163 363 IPR031052 GO:0006355
Amo16g3293 410 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 158 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3293 Amo-Chr16 139399961 139403016 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g3293 FAR1 5e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3293 - - adu:110276980 434.106