Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3285 ATGTCTTGTATCTATAAATTAACCCACACCCACTTTTCTCTGTCCTCACACATAAAACAACACTGCTCTTTGTCTCATCCTTCAAATCCCTCTATCTTCTTCTTCCAAAGGGGAGTTCCACTCAAACCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTTGAGATGGATAACAGGTTGGCCACAAACTCCTCTTATGCTTCTCTTAGATTGCCCGTTGGCTACAGATTCTGCCCCTCTGACGAGGTTTTTGTCTCTTGCTACCTCAAAAACAAGGCCCTTTCAAAAACATTGGATTTTGATGTTGTTCCTGTCTTCGATGTCTTCAACACTGAGCCCAAGAATCTCCCTTCAGGAGGAAAGGTGTTTCTGGAGACAAAGTACTTTTACTTTGATCTGAAAGAGCGTGTGTTTGAAGACAATAACAAGATTGAAGCAGGGAAAGGGCACTGGAAAAGGGTGGGGAAAGGGAATCAGGAGCTTCTAAATAACAACAACAAACTCATTGGGTTCAAGACCAAGTTTGTTTTTTGGAGGAAGAAGAACCGCACTCAATTTCTTAAAACTAAGTGGGTTATGTTTGAGTTCCGTGTTTTTCTCAACCCCTCTCAGATAATGTCATCATGGGCTGGCTACAAAATATATCTGAAGAAGGATAAGAGGAGGAACAAGAAGGCAAAGTTTTCTTGCGAGGAAAGCAGTGATGATGATGAAGAAGAAGAAGCAGAAAGAGCAAGTGAAGTAAATTTTGCAGATGAGATAAGTGGAATTAACACAGGACCTCTTTCACCAACTTCATCTAATGAATCCTCTGTTACAAATTAA 822 0.4075 MSCIYKLTHTHFSLSSHIKQHCSLSHPSNPSIFFFQRGVPLKPPFFFFFFFFFEMDNRLATNSSYASLRLPVGYRFCPSDEVFVSCYLKNKALSKTLDFDVVPVFDVFNTEPKNLPSGGKVFLETKYFYFDLKERVFEDNNKIEAGKGHWKRVGKGNQELLNNNNKLIGFKTKFVFWRKKNRTQFLKTKWVMFEFRVFLNPSQIMSSWAGYKIYLKKDKRRNKKAKFSCEESSDDDEEEEAERASEVNFADEISGINTGPLSPTSSNESSVTN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3285 273 Gene3D NAC domain 79 222 IPR036093 GO:0003677|GO:0006355
Amo16g3285 273 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 70 224 - -
Amo16g3285 273 MobiDBLite consensus disorder prediction 222 273 - -
Amo16g3285 273 MobiDBLite consensus disorder prediction 251 273 - -
Amo16g3285 273 ProSiteProfiles NAC domain profile. 70 216 IPR003441 GO:0003677|GO:0006355
Amo16g3285 273 SUPERFAMILY NAC domain 61 216 IPR036093 GO:0003677|GO:0006355
Amo16g3285 273 Pfam No apical meristem (NAM) protein 71 197 IPR003441 GO:0003677|GO:0006355
Amo16g3285 273 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 70 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3285 Amo-Chr16 139102614 139104134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3285 55 217 NAC Transcription Factor Family AT5G13180 33.140 9.71e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g3285 NAM 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3285 - - aip:107604830 481.87